Variant report

Variant	rs11715734
Chromosome Location	chr3:159118854-159118855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11706209	0.81[AMR][1000 genomes]
rs11707957	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12485627	0.83[YRI][hapmap]
rs13074822	0.84[CHB][hapmap];0.96[JPT][hapmap];0.87[ASN][1000 genomes]
rs1375403	0.96[CEU][hapmap];0.84[CHB][hapmap];0.96[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1375404	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1375405	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1375407	0.85[CEU][hapmap]
rs1448998	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1449012	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1449024	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1562671	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1562672	0.92[CEU][hapmap]
rs17795566	0.89[CEU][hapmap]
rs1975601	0.92[CEU][hapmap]
rs2084507	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2595243	0.92[CEU][hapmap]
rs2595244	0.92[CEU][hapmap]
rs2595245	0.89[CEU][hapmap]
rs2595246	0.89[CEU][hapmap]
rs2595247	0.89[CEU][hapmap]
rs2595248	0.89[CEU][hapmap]
rs2621290	0.86[CEU][hapmap]
rs2621297	0.92[CEU][hapmap]
rs2621299	0.89[CEU][hapmap]
rs2621300	0.89[CEU][hapmap]
rs2621310	0.92[CEU][hapmap]
rs2621312	0.89[CEU][hapmap]
rs2621313	0.89[CEU][hapmap]
rs2621314	0.92[CEU][hapmap]
rs3851358	1.00[CEU][hapmap]
rs4680500	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4680504	0.96[CEU][hapmap]
rs4680505	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6441255	0.96[CEU][hapmap];0.84[CHB][hapmap];0.96[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6782867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6787941	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6790560	1.00[CEU][hapmap]
rs6807076	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73166247	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs733904	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7428369	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7634829	0.85[CEU][hapmap]
rs7643500	0.80[YRI][hapmap]
rs7646959	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7649056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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