Variant report

Variant	rs13074822
Chromosome Location	chr3:159096965-159096966
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1122205	0.81[YRI][hapmap]
rs11715734	0.84[CHB][hapmap];0.96[JPT][hapmap]
rs1349165	0.82[YRI][hapmap]
rs1349166	0.82[YRI][hapmap]
rs1375403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1375404	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1375405	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1448998	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449012	1.00[CHB][hapmap];0.96[JPT][hapmap]
rs1449019	0.82[YRI][hapmap]
rs1449024	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1449027	0.84[CHB][hapmap]
rs1562669	0.81[YRI][hapmap]
rs1562671	1.00[CHB][hapmap];0.96[JPT][hapmap]
rs1562672	0.83[CHB][hapmap]
rs17795566	0.84[CHB][hapmap]
rs1868415	0.84[YRI][hapmap]
rs1975601	0.83[CHB][hapmap]
rs2084507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2365820	0.81[YRI][hapmap]
rs2365821	0.81[YRI][hapmap]
rs2595232	0.84[CHB][hapmap]
rs2595236	0.84[CHB][hapmap]
rs2595242	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs2595243	0.83[CHB][hapmap]
rs2595244	0.83[CHB][hapmap]
rs2595246	0.82[CHB][hapmap]
rs2595247	0.92[CHB][hapmap]
rs2595248	0.87[CHB][hapmap]
rs2621284	0.83[CEU][hapmap];0.83[CHB][hapmap]
rs2621290	0.87[CHB][hapmap]
rs2621294	0.84[CHB][hapmap]
rs2621295	0.84[CHB][hapmap]
rs2621297	0.83[CHB][hapmap]
rs2621299	0.84[CHB][hapmap]
rs2621300	0.83[CHB][hapmap]
rs2621306	0.83[CHB][hapmap]
rs2621310	0.87[CHB][hapmap]
rs2621312	0.87[CHB][hapmap]
rs2621313	0.88[CHB][hapmap]
rs2621314	0.87[CHB][hapmap]
rs4680500	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6441254	0.80[YRI][hapmap]
rs6441255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6782867	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs6787941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs6807076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6810169	0.82[YRI][hapmap]
rs73166247	0.93[ASN][1000 genomes]
rs733904	0.94[ASN][1000 genomes]
rs7428369	1.00[CHB][hapmap];0.96[JPT][hapmap];0.93[ASN][1000 genomes]
rs7611870	0.81[YRI][hapmap]
rs7629577	0.81[YRI][hapmap]
rs7629583	0.81[YRI][hapmap]
rs7646959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7649056	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9283611	0.81[YRI][hapmap]
rs9681445	0.81[YRI][hapmap]
rs9809459	0.80[YRI][hapmap]
rs9825664	0.80[YRI][hapmap]
rs9855118	0.81[YRI][hapmap]
rs9855265	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159096400-159097000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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