Variant report

Variant	rs11715892
Chromosome Location	chr3:151066225-151066226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151063727..151066442-chr3:151089515..151092440,2	K562	blood:
2	chr3:151052968..151055186-chr3:151065504..151067595,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1125541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11708287	0.81[JPT][hapmap]
rs11717634	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11717955	0.81[CEU][hapmap]
rs12487835	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12492699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12494865	0.91[CEU][hapmap]
rs13088531	0.81[EUR][1000 genomes]
rs13090321	0.81[EUR][1000 genomes]
rs1352886	0.85[CEU][hapmap]
rs1388627	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1388628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16863323	0.90[CEU][hapmap]
rs16863334	0.86[CEU][hapmap]
rs16863336	0.84[CEU][hapmap]
rs3971192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4076581	0.85[CEU][hapmap]
rs41399847	0.82[JPT][hapmap]
rs4679794	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793061	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151063200-151067200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr3:151063800-151066800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr3:151063800-151099800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:151064200-151069000	Enhancers	Primary hematopoietic stem cells	blood
5	chr3:151064200-151069800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:151064400-151067800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:151064400-151089200	Weak transcription	NHLF	lung
8	chr3:151064600-151067200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:151064600-151068400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:151064600-151075200	Weak transcription	Adipose Nuclei	Adipose
11	chr3:151064600-151112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:151065200-151069400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:151065400-151069000	Enhancers	Primary B cells from cord blood	blood
14	chr3:151065400-151079600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:151065600-151066400	Enhancers	Brain Hippocampus Middle	brain
16	chr3:151065600-151066600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:151065600-151066800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:151065600-151067000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:151065600-151109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:151065600-151115200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:151065800-151067000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr3:151065800-151067000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:151065800-151067200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:151065800-151067600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:151065800-151067600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr3:151065800-151067800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:151065800-151082200	Weak transcription	Fetal Thymus	thymus
28	chr3:151066000-151066400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr3:151066000-151066800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:151066000-151067000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr3:151066000-151067600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:151066000-151069000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr3:151066000-151074800	Weak transcription	Brain Anterior Caudate	brain

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