Variant report

Variant	rs11717634
Chromosome Location	chr3:150984941-150984942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1125541	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11715892	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12487835	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12492699	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13088531	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13090321	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1388627	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1388628	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3971192	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4679794	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6793061	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150974400-150987600	Weak transcription	Aorta	Aorta
2	chr3:150977800-151000000	Weak transcription	Placenta	Placenta
3	chr3:150979400-150987600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:150981400-150986800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:150981600-150986800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:150981800-150986400	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:150981800-150994000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:150982000-150985200	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:150982400-150985000	Enhancers	Stomach Smooth Muscle	stomach
10	chr3:150982800-150986200	Weak transcription	Stomach Mucosa	stomach
11	chr3:150983000-151011000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:150983600-150987600	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:150983800-150985400	Enhancers	Fetal Lung	lung
14	chr3:150983800-150986400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:150983800-150986400	Weak transcription	Adipose Nuclei	Adipose
16	chr3:150983800-150989400	Enhancers	Primary B cells from cord blood	blood
17	chr3:150983800-151000600	Weak transcription	Brain Substantia Nigra	brain
18	chr3:150984000-150986800	Weak transcription	Fetal Thymus	thymus
19	chr3:150984000-150996000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:150984200-150998800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:150984600-150985600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:150984600-150985800	Enhancers	Colon Smooth Muscle	Colon
24	chr3:150984600-150986000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr3:150984600-150986200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:150984600-150986200	Weak transcription	GM12878-XiMat	blood
27	chr3:150984600-150987600	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr3:150984600-150988200	Weak transcription	Fetal Stomach	stomach
29	chr3:150984600-151003600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr3:150984600-151003600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:150984800-150985600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:150984800-150985600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:150984800-150986000	Weak transcription	Primary B cells from peripheral blood	blood
34	chr3:150984800-150987000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:150984800-150987600	Weak transcription	Brain Anterior Caudate	brain
36	chr3:150984800-150988200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:150984800-150989000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:150984800-150993800	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links