Variant report

Variant	rs1171592
Chromosome Location	chr10:61509588-61509589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10993975	1.00[CEU][hapmap]
rs1171581	0.89[EUR][1000 genomes]
rs1171584	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1171585	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1171593	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1171611	0.89[EUR][1000 genomes]
rs1180566	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2671610	0.89[EUR][1000 genomes]
rs7080012	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61505400-61511000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:61507200-61510600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr10:61507400-61510200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:61508200-61511000	Enhancers	Psoas Muscle	Psoas
5	chr10:61509000-61509600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:61509200-61509600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:61509400-61510200	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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