Variant report

Variant	rs1171585
Chromosome Location	chr10:61497611-61497612
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10993975	0.89[EUR][1000 genomes]
rs1171581	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1171584	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1171592	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1171593	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1171611	1.00[EUR][1000 genomes]
rs1171612	0.87[EUR][1000 genomes]
rs1180566	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2671610	1.00[EUR][1000 genomes]
rs7091190	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61495200-61507400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:61496000-61500600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:61496000-61507200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:61497600-61498200	Enhancers	Stomach Mucosa	stomach
5	chr10:61497600-61498400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:61497600-61498600	Strong transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links