The 2.0 version of rSNPBase
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Variant report
Variant
rs1171612
Chromosome Location
chr10:61476680-61476681
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr10:61471063..61472911-chr10:61475753..61478637,2
K562
blood:
2
chr10:61467975..61470847-chr10:61475638..61478406,3
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000165449
Chromatin interaction
Extended variants information (count: 7 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:7)
rs_ID
r
2
[population]
rs1171581
0.87[EUR][1000 genomes]
rs1171584
0.87[EUR][1000 genomes]
rs1171585
0.87[EUR][1000 genomes]
rs1171593
0.81[EUR][1000 genomes]
rs1171611
0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1180566
0.87[EUR][1000 genomes]
rs2671610
0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links