Variant report

Variant	rs11716325
Chromosome Location	chr3:78808015-78808016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11127633	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11127635	0.87[TSI][hapmap]
rs12636958	0.80[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1386431	0.80[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1865862	0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2608021	0.90[CHD][hapmap]
rs333472	0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs34811803	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3926199	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs416025	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.97[ASN][1000 genomes]
rs424737	0.81[ASN][1000 genomes]
rs444992	0.81[ASN][1000 genomes]
rs57373402	0.81[ASN][1000 genomes]
rs7611402	0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753211	chr3:78784269-78809116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv822149	chr3:78807515-78809579	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78787400-78814800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:78798600-78810200	Weak transcription	Fetal Lung	lung
3	chr3:78802200-78810200	Weak transcription	Fetal Stomach	stomach
4	chr3:78803800-78814800	Weak transcription	NHDF-Ad	bronchial
5	chr3:78804400-78814400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:78804800-78808200	Weak transcription	HepG2	liver
7	chr3:78806600-78808400	Enhancers	Brain Hippocampus Middle	brain
8	chr3:78807000-78811000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:78807000-78813600	Weak transcription	Fetal Brain Male	brain
10	chr3:78807200-78808200	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:78807200-78811000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:78807200-78814600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:78807200-78814800	Weak transcription	Brain Anterior Caudate	brain
14	chr3:78807600-78815200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:78808000-78808400	Enhancers	Pancreas	Pancrea
16	chr3:78808000-78810200	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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