Variant report

Variant	rs333472
Chromosome Location	chr3:78824912-78824913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11127633	0.84[ASN][1000 genomes]
rs11127635	1.00[ASW][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11712472	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11713976	0.87[ASN][1000 genomes]
rs11716325	0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs11718731	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12633168	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12633926	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12636958	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs12638686	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13065160	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13071446	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13083478	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17016554	0.83[CHB][hapmap]
rs1865862	0.82[CHD][hapmap];0.80[JPT][hapmap];0.89[MKK][hapmap];0.84[ASN][1000 genomes]
rs1970807	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs333490	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34494591	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34811803	0.82[ASN][1000 genomes]
rs35056070	0.94[ASN][1000 genomes]
rs35763568	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs35891410	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs35984348	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3856695	0.91[CHB][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs416025	0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs424737	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs444992	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60860653	0.86[ASN][1000 genomes]
rs62257492	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62257495	0.85[ASN][1000 genomes]
rs62257496	0.86[ASN][1000 genomes]
rs6773457	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7611402	1.00[ASW][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7627461	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9637502	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877019	chr3:78808850-78877217	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432459	chr3:78819310-78874310	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78824800-78825200	Enhancers	HepG2	liver

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