The 2.0 version of rSNPBase

Variant report

Variant rs11720172
Chromosome Location chr3:100106302-100106303
allele C/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:100079400-100107600 Strong transcription Dnd41 blood
2 chr3:100081200-100107000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr3:100081200-100107000 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr3:100081200-100107800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr3:100082200-100107200 Strong transcription Breast Myoepithelial Primary Cells Breast
6 chr3:100087600-100114600 Weak transcription Small Intestine intestine
7 chr3:100089200-100107200 Strong transcription Primary hematopoietic stem cells short term culture blood
8 chr3:100090200-100118400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr3:100091600-100117600 Weak transcription Placenta Amnion Placenta Amnion
10 chr3:100093200-100106400 Strong transcription GM12878-XiMat blood
11 chr3:100096800-100109800 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr3:100096800-100112800 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr3:100099000-100110200 Weak transcription Spleen Spleen
14 chr3:100099000-100118600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr3:100099200-100108600 Weak transcription Fetal Stomach stomach
16 chr3:100099800-100117600 Weak transcription Colonic Mucosa Colon
17 chr3:100100400-100107200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr3:100100800-100108000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
19 chr3:100100800-100110800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
20 chr3:100102800-100118200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr3:100103400-100106400 Weak transcription Primary neutrophils fromperipheralblood blood
22 chr3:100103600-100106800 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr3:100103800-100106400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
24 chr3:100103800-100112800 Weak transcription iPS-15b Cell Line embryonic stem cell
25 chr3:100103800-100117600 Weak transcription Fetal Kidney kidney
26 chr3:100103800-100118600 Weak transcription Brain Substantia Nigra brain
27 chr3:100104000-100107600 Weak transcription Fetal Brain Female brain
28 chr3:100104000-100108000 Weak transcription Brain Inferior Temporal Lobe brain
29 chr3:100104000-100117600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr3:100104200-100107000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
31 chr3:100104200-100107000 Weak transcription Fetal Muscle Leg muscle
32 chr3:100104200-100107000 Weak transcription K562 blood
33 chr3:100104200-100108000 Weak transcription Primary T cells from cord blood blood
34 chr3:100104200-100114600 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr3:100104200-100117600 Weak transcription Brain Angular Gyrus brain
36 chr3:100104200-100117600 Weak transcription Brain Cingulate Gyrus brain
37 chr3:100104200-100117600 Weak transcription Psoas Muscle Psoas
38 chr3:100104200-100117600 Weak transcription Thymus Thymus
39 chr3:100104200-100117800 Weak transcription Esophagus oesophagus
40 chr3:100104200-100118200 Weak transcription HSMMtube muscle
41 chr3:100104200-100118600 Weak transcription H9 Cell Line embryonic stem cell
42 chr3:100104200-100118600 Weak transcription Aorta Aorta
43 chr3:100104400-100107400 Enhancers HepG2 liver
44 chr3:100104400-100107600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr3:100104400-100110800 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr3:100104400-100117200 Weak transcription NHEK skin
47 chr3:100104600-100107400 Weak transcription Brain Germinal Matrix brain
48 chr3:100104600-100107800 Weak transcription Brain Hippocampus Middle brain
49 chr3:100104600-100108600 Weak transcription Fetal Thymus thymus
50 chr3:100104600-100109000 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015