Variant report

Variant	rs11720224
Chromosome Location	chr3:134380654-134380655
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13060869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13083717	1.00[CHB][hapmap]
rs13085889	1.00[CHB][hapmap]
rs13098689	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs34136671	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34701532	0.80[ASN][1000 genomes]
rs57936237	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60716777	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6762606	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7637801	0.96[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11720224	ANAPC13	cis	Muscle Skeletal	GTEx
rs11720224	ANAPC13	cis	Esophagus Mucosa	GTEx
rs11720224	ANAPC13	cis	Esophagus Muscularis	GTEx
rs11720224	ANAPC13	cis	Nerve Tibial	GTEx
rs11720224	ANAPC13	cis	Artery Tibial	GTEx
rs11720224	ANAPC13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134371000-134386800	Weak transcription	Pancreas	Pancrea
2	chr3:134376800-134382800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:134378200-134384000	Weak transcription	Fetal Brain Male	brain
4	chr3:134378400-134382600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:134379200-134380800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:134379200-134380800	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:134379400-134381600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:134379400-134382200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:134379600-134381600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:134379600-134382000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:134379800-134381600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:134379800-134382200	Weak transcription	Left Ventricle	heart
13	chr3:134379800-134382200	Weak transcription	Psoas Muscle	Psoas
14	chr3:134379800-134382400	Weak transcription	Fetal Heart	heart
15	chr3:134380000-134382200	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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