Variant report

Variant	rs57936237
Chromosome Location	chr3:134385789-134385790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134370814..134375265-chr3:134381984..134385819,4	MCF-7	breast:
2	chr3:134380085..134381686-chr3:134385078..134387889,2	MCF-7	breast:
3	chr3:134378728..134380382-chr3:134383107..134386104,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11720224	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13060869	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34136671	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60716777	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6762606	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7637801	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs57936237	ANAPC13	cis	Nerve Tibial	GTEx
rs57936237	ANAPC13	cis	Artery Tibial	GTEx
rs57936237	ANAPC13	cis	Muscle Skeletal	GTEx
rs57936237	ANAPC13	cis	Esophagus Mucosa	GTEx

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134371000-134386800	Weak transcription	Pancreas	Pancrea
2	chr3:134380800-134386600	Enhancers	Fetal Muscle Leg	muscle
3	chr3:134381600-134386200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:134381600-134388400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:134383000-134386200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:134384400-134392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:134384800-134387400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:134385000-134385800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:134385000-134385800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:134385000-134385800	Enhancers	HSMM	muscle
11	chr3:134385200-134385800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:134385200-134386000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:134385200-134386000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:134385200-134386000	Enhancers	Left Ventricle	heart
15	chr3:134385200-134386000	Enhancers	Psoas Muscle	Psoas
16	chr3:134385200-134386000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr3:134385200-134386200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:134385200-134386200	Enhancers	HMEC	breast
19	chr3:134385200-134386200	Enhancers	NHDF-Ad	bronchial
20	chr3:134385200-134386200	Flanking Active TSS	Osteobl	bone
21	chr3:134385200-134386600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:134385200-134386600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:134385200-134390600	Weak transcription	Fetal Brain Male	brain
24	chr3:134385400-134385800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:134385600-134386000	Weak transcription	Right Ventricle	heart
26	chr3:134385600-134386000	Active TSS	Sigmoid Colon	Sigmoid Colon
27	chr3:134385600-134386600	Enhancers	Fetal Muscle Trunk	muscle

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