Variant report

Variant	rs11721741
Chromosome Location	chr4:121629986-121629987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11721810	0.88[ASN][1000 genomes]
rs11721869	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11730092	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11732068	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11732180	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11736461	0.93[ASN][1000 genomes]
rs12499000	1.00[ASW][hapmap]
rs13110077	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13117731	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[MKK][hapmap]
rs13121457	1.00[CHB][hapmap]
rs13138000	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[MKK][hapmap]
rs13145830	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1353469	0.86[CHB][hapmap]
rs1390555	0.86[CHB][hapmap]
rs1397775	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17345994	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1948542	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[MKK][hapmap]
rs2047298	1.00[CHB][hapmap]
rs2203060	1.00[ASW][hapmap]
rs34414268	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34616798	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34631575	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34709185	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35021943	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35349319	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35418908	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35445561	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35576528	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35588958	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36003774	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3761721	1.00[ASW][hapmap]
rs3804168	1.00[ASW][hapmap]
rs4833179	1.00[ASW][hapmap]
rs4833668	0.89[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4833680	1.00[ASW][hapmap]
rs6841589	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71600494	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71600495	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71600496	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71600499	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71600500	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121616800-121631000	Weak transcription	NHEK	skin
2	chr4:121617600-121630200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:121618600-121630600	Weak transcription	Fetal Lung	lung
4	chr4:121620800-121637600	Weak transcription	Psoas Muscle	Psoas
5	chr4:121620800-121654400	Weak transcription	Left Ventricle	heart
6	chr4:121620800-121671400	Weak transcription	Pancreas	Pancrea
7	chr4:121621000-121630600	Weak transcription	Fetal Heart	heart
8	chr4:121625600-121657600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:121625800-121630800	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:121626000-121630600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:121626000-121658200	Weak transcription	Aorta	Aorta
12	chr4:121626800-121631400	Weak transcription	Right Ventricle	heart
13	chr4:121629000-121630000	Strong transcription	Ovary	ovary
14	chr4:121629600-121643400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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