Variant report

Variant	rs35021943
Chromosome Location	chr4:121643239-121643240
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11721741	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13110077	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35588958	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36003774	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71600496	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71600500	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121620800-121654400	Weak transcription	Left Ventricle	heart
2	chr4:121620800-121671400	Weak transcription	Pancreas	Pancrea
3	chr4:121625600-121657600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:121626000-121658200	Weak transcription	Aorta	Aorta
5	chr4:121629600-121643400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:121630000-121671400	Weak transcription	Ovary	ovary
7	chr4:121636000-121643600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:121640600-121646600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:121641200-121670400	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:121641400-121645600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:121641400-121669600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:121641600-121647000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:121641600-121652800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:121641800-121647200	Weak transcription	Fetal Thymus	thymus
15	chr4:121642000-121644600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:121642200-121644000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr4:121642200-121644000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr4:121642200-121644200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr4:121642400-121645200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:121642600-121644000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:121642600-121644400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr4:121642800-121670600	Weak transcription	Fetal Stomach	stomach
23	chr4:121643000-121643800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:121643000-121644000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:121643000-121644000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr4:121643000-121644000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:121643000-121644000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr4:121643000-121646800	Weak transcription	Fetal Lung	lung
29	chr4:121643200-121643600	Weak transcription	Fetal Heart	heart

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