Variant report

Variant	rs11722826
Chromosome Location	chr4:173935967-173935968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:173933040..173936036-chr4:173946705..173949222,2	K562	blood:
2	chr4:173935748..173936466-chr4:174092019..174092785,2	MCF-7	breast:
3	chr4:173933406..173936346-chr4:174089041..174090950,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245213	Chromatin interaction
ENSG00000109586	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10019310	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10020676	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11132976	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721460	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11939508	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13125629	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145272	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17059107	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28451718	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28569824	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3905287	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4331761	0.83[EUR][1000 genomes]
rs4557236	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4695821	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832095	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6833557	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7669563	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680255	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996247	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173920600-173942400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:173933400-173936000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:173933600-173936600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:173933600-173936600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:173933600-173937000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:173934200-173936200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:173934200-173936200	Enhancers	Hela-S3	cervix
8	chr4:173934400-173936200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:173934400-173936200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:173934400-173936600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:173934800-173936000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:173934800-173936000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:173934800-173936000	Enhancers	Stomach Mucosa	stomach
14	chr4:173934800-173936000	Enhancers	HUVEC	blood vessel
15	chr4:173934800-173936000	Enhancers	NH-A	brain
16	chr4:173934800-173936000	Enhancers	Osteobl	bone
17	chr4:173934800-173936200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:173934800-173936600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr4:173935000-173936000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr4:173935000-173936400	Enhancers	HSMM	muscle
21	chr4:173935200-173936000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr4:173935200-173936000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr4:173935200-173936000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:173935400-173936000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr4:173935600-173936000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:173935600-173936000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:173935600-173936000	Enhancers	A549	lung
28	chr4:173935600-173940000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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