Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:173946662..173949460-chr4:173950705..173952890,2	K562	blood:
2	chr4:173949162..173951015-chr4:173951362..173953112,2	MCF-7	breast:
3	chr4:173946323..173950748-chr4:174087979..174092367,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245213	Chromatin interaction
ENSG00000109586	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10019310	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020676	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11132976	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11721460	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11722826	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11939508	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13125629	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13145272	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17059107	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28569824	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3905287	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4331761	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4557236	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695821	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62341925	0.97[ASN][1000 genomes]
rs6832095	0.90[EUR][1000 genomes]
rs6833557	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7669563	0.87[EUR][1000 genomes]
rs7680255	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9996247	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173944600-173955600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:173949400-173950800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:173949400-173951600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:173950000-173951400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:173950200-173950800	Enhancers	Stomach Mucosa	stomach
6	chr4:173950200-173951400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:173950400-173959400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:173950600-173950800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:173950600-173951000	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search: