Variant report
| Variant | rs11723329 |
|---|---|
| Chromosome Location | chr4:78336483-78336484 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:78306562..78308497-chr4:78334856..78338257,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10021560 | 0.89[ASN][1000 genomes] |
| rs11931644 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12643983 | 0.86[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.81[MKK][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes] |
| rs4859498 | 0.90[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap] |
| rs4859836 | 0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs6833973 | 0.90[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.87[YRI][hapmap] |
| rs6851181 | 0.95[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap] |
| rs7677281 | 0.95[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.96[TSI][hapmap];0.87[YRI][hapmap] |
| rs7677301 | 0.83[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs7680024 | 0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap] |
| rs7690027 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829974 | chr4:78240718-78415642 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
