Variant report

Variant	rs7680024
Chromosome Location	chr4:78343246-78343247
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10021560	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11723329	0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap]
rs11931644	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12643983	1.00[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4859498	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap]
rs4859836	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6833973	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs6851181	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs7677281	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs7677301	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap]
rs7690027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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