Variant report

Variant	rs11723732
Chromosome Location	chr4:77370557-77370558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10002170	0.84[AFR][1000 genomes]
rs10031136	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13146564	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13152154	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1398017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1849215	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1949137	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2136854	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4241593	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4475168	0.84[AFR][1000 genomes]
rs4859673	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859674	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6532414	0.81[AFR][1000 genomes]
rs6532417	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6839100	0.85[EUR][1000 genomes]
rs6843293	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757941	chr4:77264596-77417457	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759262	chr4:77264596-77455405	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77357400-77370600	Weak transcription	Fetal Brain Male	brain
2	chr4:77360400-77371200	Weak transcription	Aorta	Aorta
3	chr4:77364200-77370600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:77366200-77372000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:77366600-77373600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:77366800-77372000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:77367000-77371200	Weak transcription	Fetal Intestine Small	intestine
8	chr4:77367200-77372000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:77367400-77370600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:77367400-77371000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:77367800-77371400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:77368000-77371200	Enhancers	HSMMtube	muscle
13	chr4:77368000-77371400	Enhancers	Brain Substantia Nigra	brain
14	chr4:77368000-77371400	Enhancers	NH-A	brain
15	chr4:77368200-77371000	Enhancers	Liver	Liver
16	chr4:77368400-77372000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:77368400-77372000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:77368600-77371400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:77368600-77371400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:77368800-77370600	Enhancers	Fetal Heart	heart
21	chr4:77368800-77370600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:77368800-77371800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr4:77369000-77370600	Weak transcription	HMEC	breast
24	chr4:77369200-77370600	Weak transcription	Fetal Lung	lung
25	chr4:77369200-77370800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:77369400-77371800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr4:77369600-77370600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:77369600-77370600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:77369600-77370600	Weak transcription	Brain Angular Gyrus	brain
30	chr4:77369600-77370800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr4:77369600-77371400	Enhancers	Brain Anterior Caudate	brain
32	chr4:77369600-77371400	Enhancers	Brain Hippocampus Middle	brain
33	chr4:77369800-77371600	Enhancers	HUVEC	blood vessel
34	chr4:77369800-77378200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:77369800-77378400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:77370000-77370800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr4:77370000-77371200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr4:77370000-77378200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:77370000-77380800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr4:77370400-77371000	Enhancers	Brain Cingulate Gyrus	brain
41	chr4:77370400-77371000	Weak transcription	HSMM	muscle
42	chr4:77370400-77371400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr4:77370400-77371600	Enhancers	HUES6 Cell Line	embryonic stem cell

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