Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10002170	0.95[AFR][1000 genomes]
rs10031136	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723732	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13146564	0.85[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13152154	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1398017	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1511817	0.80[CEU][hapmap]
rs1849215	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1949137	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2136854	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4241593	0.84[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4475168	0.95[AFR][1000 genomes]
rs4859673	0.83[CEU][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4859674	0.84[CEU][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62300863	0.90[EUR][1000 genomes]
rs62300882	0.82[EUR][1000 genomes]
rs6532414	0.92[AFR][1000 genomes]
rs6532416	0.89[ASN][1000 genomes]
rs6839100	0.82[EUR][1000 genomes]
rs6843293	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757941	chr4:77264596-77417457	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759262	chr4:77264596-77455405	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757069	chr4:77392092-77455405	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77387600-77406000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:77400400-77405800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:77404600-77405800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:77405400-77407600	Enhancers	Liver	Liver
5	chr4:77405600-77408200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:77405600-77408200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:77405600-77411200	Enhancers	Cortex derived primary cultured neurospheres	brain

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