Variant report

Variant	rs11724467
Chromosome Location	chr4:16153887-16153888
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:16152453..16154569-chr4:16162351..16164254,2	K562	blood:
2	chr4:16150924..16154971-chr4:16155826..16158678,3	K562	blood:
3	chr4:16146240..16148826-chr4:16152281..16154306,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10034719	0.86[ASN][1000 genomes]
rs10516298	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11724076	0.82[ASN][1000 genomes]
rs11724423	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11731602	0.83[ASN][1000 genomes]
rs11736424	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11736827	0.81[ASN][1000 genomes]
rs12504884	0.82[ASN][1000 genomes]
rs12506478	0.85[ASN][1000 genomes]
rs12513244	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12643544	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12651110	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1662652	0.90[ASN][1000 genomes]
rs16893099	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893119	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16893138	0.83[ASN][1000 genomes]
rs16893143	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16893144	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16893147	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16893158	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35851218	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56023844	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56218994	0.83[ASN][1000 genomes]
rs57089965	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58047733	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60460559	0.82[ASN][1000 genomes]
rs60768295	0.82[ASN][1000 genomes]
rs73128422	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73128457	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73130433	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73130439	0.83[ASN][1000 genomes]
rs73130445	0.83[ASN][1000 genomes]
rs73130449	0.85[ASN][1000 genomes]
rs73130451	0.85[ASN][1000 genomes]
rs73130453	0.85[ASN][1000 genomes]
rs73130456	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3464820	chr4:16153176-16154528	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3464821	chr4:16153305-16154381	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3464822	chr4:16153305-16154381	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv13992	chr4:16153415-16154347	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16150200-16160800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:16150800-16166600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:16151600-16158000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:16152000-16161600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:16152000-16163800	Weak transcription	Thymus	Thymus
6	chr4:16152400-16154400	Strong transcription	Primary T cells from cord blood	blood
7	chr4:16152800-16159800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:16153000-16163600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:16153000-16164400	Weak transcription	NH-A	brain
10	chr4:16153200-16165200	Weak transcription	HSMM	muscle
11	chr4:16153400-16157200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:16153600-16165600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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