Variant report

Variant	rs11724613
Chromosome Location	chr4:15436168-15436169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15434969..15437735-chr4:15437864..15439477,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55931907	1.00[AFR][1000 genomes]
rs62289303	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62289343	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62290592	1.00[AFR][1000 genomes]
rs73230952	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15430800-15436200	Weak transcription	Brain Germinal Matrix	brain
2	chr4:15430800-15437000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:15430800-15437400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:15431400-15436200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:15431400-15437800	Weak transcription	Ovary	ovary
6	chr4:15431400-15443800	Weak transcription	Aorta	Aorta
7	chr4:15433400-15437600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:15433800-15437400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:15435000-15436400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:15435000-15436400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:15435000-15436600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:15435000-15436600	Enhancers	NHDF-Ad	bronchial
13	chr4:15435000-15436800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:15435000-15438000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:15435200-15436600	Enhancers	Osteobl	bone
16	chr4:15435200-15438200	Enhancers	Adipose Nuclei	Adipose
17	chr4:15435400-15436400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:15435400-15436600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:15435600-15437200	Weak transcription	Fetal Brain Male	brain
20	chr4:15435600-15438000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:15435800-15437000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:15436000-15436400	Enhancers	NHEK	skin

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