Variant report

Variant	rs11724834
Chromosome Location	chr4:62710370-62710371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11723129	0.99[EUR][1000 genomes]
rs11724057	0.84[EUR][1000 genomes]
rs11724143	0.84[EUR][1000 genomes]
rs11727239	0.99[EUR][1000 genomes]
rs11732286	0.84[EUR][1000 genomes]
rs11734361	0.99[EUR][1000 genomes]
rs1839617	0.99[EUR][1000 genomes]
rs35113693	0.99[EUR][1000 genomes]
rs60571656	1.00[ASN][1000 genomes]
rs6551657	0.84[EUR][1000 genomes]
rs6829758	0.99[EUR][1000 genomes]
rs6840216	0.84[EUR][1000 genomes]
rs6842293	1.00[EUR][1000 genomes]
rs73823249	1.00[EUR][1000 genomes]
rs7662566	0.84[EUR][1000 genomes]
rs7671478	0.99[EUR][1000 genomes]
rs7683391	0.99[EUR][1000 genomes]
rs7689173	0.84[EUR][1000 genomes]
rs7690254	0.99[EUR][1000 genomes]
rs7694929	0.99[EUR][1000 genomes]
rs7697485	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62707800-62718600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:62708400-62713800	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:62708800-62718800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:62710200-62710400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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