Variant report

Variant	rs73823249
Chromosome Location	chr4:62694883-62694884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POLR2B-15	chr4:62693447-62696657	l_2654_chr4:62682056-62697259_heart

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10517548	0.89[ASN][1000 genomes]
rs11723129	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11724057	0.84[EUR][1000 genomes]
rs11724143	0.84[EUR][1000 genomes]
rs11724834	1.00[EUR][1000 genomes]
rs11727239	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11732286	0.84[EUR][1000 genomes]
rs11734361	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1470722	0.95[ASN][1000 genomes]
rs17226265	0.92[ASN][1000 genomes]
rs17292030	0.92[ASN][1000 genomes]
rs17292037	0.95[ASN][1000 genomes]
rs17292044	0.95[ASN][1000 genomes]
rs1839617	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2345042	0.95[ASN][1000 genomes]
rs35113693	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35680649	0.86[ASN][1000 genomes]
rs57991081	0.89[ASN][1000 genomes]
rs58739264	0.92[ASN][1000 genomes]
rs60536298	0.94[ASN][1000 genomes]
rs60683749	0.87[ASN][1000 genomes]
rs6551657	0.84[EUR][1000 genomes]
rs6814909	0.92[ASN][1000 genomes]
rs6824026	0.95[ASN][1000 genomes]
rs6829758	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6839737	0.92[ASN][1000 genomes]
rs6839996	0.92[ASN][1000 genomes]
rs6840216	0.84[EUR][1000 genomes]
rs6842293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846860	0.95[ASN][1000 genomes]
rs73823242	0.92[ASN][1000 genomes]
rs73823243	0.89[ASN][1000 genomes]
rs73823248	0.98[ASN][1000 genomes]
rs73823250	0.97[ASN][1000 genomes]
rs7654504	0.92[ASN][1000 genomes]
rs7657806	0.87[ASN][1000 genomes]
rs7662566	0.84[EUR][1000 genomes]
rs7671445	0.92[ASN][1000 genomes]
rs7671478	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7676199	0.92[ASN][1000 genomes]
rs7683391	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7689173	0.84[EUR][1000 genomes]
rs7690254	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7694929	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7697485	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7698778	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62682600-62697600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:62683400-62697400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:62692800-62695000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:62693000-62695000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr4:62693000-62695000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:62694200-62700400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:62694400-62697600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:62694800-62695000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr4:62694800-62697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:62694800-62697400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:62694800-62697600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:62694800-62697800	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links