Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11722925	0.87[CHD][hapmap];0.86[JPT][hapmap]
rs11722994	0.88[JPT][hapmap]
rs11946229	0.85[CEU][hapmap]
rs13117927	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]
rs13128130	0.88[JPT][hapmap]
rs13128781	0.86[JPT][hapmap]
rs13136746	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1425330	0.88[JPT][hapmap]
rs1425331	0.84[JPT][hapmap]
rs1485517	0.86[CHD][hapmap]
rs1545915	0.87[CHD][hapmap]
rs17448782	0.90[CEU][hapmap];0.90[TSI][hapmap]
rs17448844	0.86[CEU][hapmap]
rs17455886	0.95[CEU][hapmap];0.85[TSI][hapmap]
rs1872461	0.87[CHD][hapmap]
rs2322884	0.87[CHD][hapmap]
rs2874896	0.87[CHD][hapmap]
rs4697211	0.85[CHB][hapmap]
rs6448032	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs6448033	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs6448034	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs6448036	0.86[CEU][hapmap];0.84[TSI][hapmap]
rs6827486	0.88[JPT][hapmap]
rs6829425	0.88[JPT][hapmap]
rs6833463	0.95[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs6844302	0.90[CEU][hapmap];0.90[TSI][hapmap]
rs6844318	0.90[CEU][hapmap];0.88[TSI][hapmap]
rs6850434	0.85[CEU][hapmap]
rs6850742	0.88[JPT][hapmap]
rs7659595	0.95[CEU][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7686656	0.86[CEU][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv878749	chr4:21189870-21236883	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1002610	chr4:21192993-21261812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21204400-21205400	Enhancers	HepG2	liver
2	chr4:21204800-21205400	Enhancers	Esophagus	oesophagus
3	chr4:21204800-21206000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: