Variant report

Variant	rs6829425
Chromosome Location	chr4:21261620-21261621
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11722925	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs11722994	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724880	0.88[JPT][hapmap]
rs11735059	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128130	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128781	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146289	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1425330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1425331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1425344	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1485514	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1485517	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[TSI][hapmap]
rs1545915	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[TSI][hapmap]
rs17455886	0.82[CHD][hapmap]
rs1872458	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1872459	0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[TSI][hapmap]
rs1872461	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[TSI][hapmap]
rs2059488	1.00[CHB][hapmap]
rs2322883	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2322884	1.00[CHB][hapmap];0.85[TSI][hapmap]
rs28591172	0.88[ASN][1000 genomes]
rs2874896	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap]
rs34595298	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35921744	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697213	0.84[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap]
rs6827486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6828595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850434	0.81[CEU][hapmap]
rs6850742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7659595	0.82[CHD][hapmap]
rs901112	0.85[TSI][hapmap]
rs901113	0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002610	chr4:21192993-21261812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21261200-21261800	Enhancers	Fetal Brain Male	brain
2	chr4:21261400-21262600	Enhancers	HepG2	liver
3	chr4:21261600-21262000	Weak transcription	Gastric	stomach

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