Variant report

Variant	rs1872458
Chromosome Location	chr4:21280431-21280432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11722925	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11722994	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs11735059	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs13128130	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs13128781	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs13146289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1425330	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1425331	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1425342	1.00[CEU][hapmap]
rs1425344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1485514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1485517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1545915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1872459	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1872461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2059488	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2322883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2322884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs28591172	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2874896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34595298	0.83[ASN][1000 genomes]
rs35921744	0.83[ASN][1000 genomes]
rs4697211	0.81[JPT][hapmap]
rs4697215	1.00[CEU][hapmap]
rs6827486	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6828595	0.83[ASN][1000 genomes]
rs6829425	1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6850742	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs901112	1.00[CEU][hapmap]
rs901113	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1014062	chr4:21270358-21479027	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links