Variant report

Variant	rs11725850
Chromosome Location	chr4:95551649-95551650
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10031423	0.88[EUR][1000 genomes]
rs1043853	0.85[EUR][1000 genomes]
rs1048627	0.85[EUR][1000 genomes]
rs1056773	0.84[EUR][1000 genomes]
rs11097433	0.83[EUR][1000 genomes]
rs11097434	0.81[EUR][1000 genomes]
rs11097435	0.82[EUR][1000 genomes]
rs11723532	0.91[EUR][1000 genomes]
rs11724023	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11732668	0.92[EUR][1000 genomes]
rs11732687	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11734014	0.92[EUR][1000 genomes]
rs12331240	0.83[EUR][1000 genomes]
rs12331253	0.84[EUR][1000 genomes]
rs12507763	0.83[EUR][1000 genomes]
rs12511111	0.85[EUR][1000 genomes]
rs12639887	0.83[EUR][1000 genomes]
rs12639980	0.89[EUR][1000 genomes]
rs12641023	0.90[EUR][1000 genomes]
rs12643849	0.84[EUR][1000 genomes]
rs12643867	0.84[EUR][1000 genomes]
rs12649976	0.90[EUR][1000 genomes]
rs12650641	0.86[EUR][1000 genomes]
rs13110828	0.86[EUR][1000 genomes]
rs13130496	0.86[EUR][1000 genomes]
rs13135257	0.87[EUR][1000 genomes]
rs14082	0.84[EUR][1000 genomes]
rs1472961	0.81[EUR][1000 genomes]
rs1472962	0.81[EUR][1000 genomes]
rs1543013	0.91[EUR][1000 genomes]
rs2047025	0.90[EUR][1000 genomes]
rs2280002	0.86[EUR][1000 genomes]
rs2452601	0.80[EUR][1000 genomes]
rs2902987	0.88[EUR][1000 genomes]
rs34403066	0.91[EUR][1000 genomes]
rs34438564	0.91[EUR][1000 genomes]
rs34507709	0.86[EUR][1000 genomes]
rs35959898	0.93[EUR][1000 genomes]
rs3805263	0.84[EUR][1000 genomes]
rs3805264	0.84[EUR][1000 genomes]
rs3943	0.84[EUR][1000 genomes]
rs4699567	0.92[EUR][1000 genomes]
rs5013417	0.84[EUR][1000 genomes]
rs56921499	0.83[EUR][1000 genomes]
rs60195134	0.92[EUR][1000 genomes]
rs6532495	0.83[EUR][1000 genomes]
rs6532496	0.83[EUR][1000 genomes]
rs6532497	0.83[EUR][1000 genomes]
rs6829381	0.92[EUR][1000 genomes]
rs71601224	0.92[EUR][1000 genomes]
rs7690296	0.90[EUR][1000 genomes]
rs951613	0.89[EUR][1000 genomes]
rs973995	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95493200-95584800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:95497200-95553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:95497200-95569400	Weak transcription	Esophagus	oesophagus
4	chr4:95511200-95554800	Weak transcription	NHDF-Ad	bronchial
5	chr4:95515000-95562000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:95525000-95569600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:95525000-95586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:95525000-95590000	Weak transcription	Lung	lung
9	chr4:95525400-95562200	Weak transcription	NHLF	lung
10	chr4:95527800-95592200	Weak transcription	Pancreas	Pancrea
11	chr4:95528000-95555000	Weak transcription	Aorta	Aorta
12	chr4:95533800-95594200	Weak transcription	Gastric	stomach
13	chr4:95537000-95563000	Weak transcription	K562	blood
14	chr4:95537600-95573400	Weak transcription	Spleen	Spleen
15	chr4:95537600-95592800	Weak transcription	Fetal Stomach	stomach
16	chr4:95538000-95585200	Weak transcription	Colonic Mucosa	Colon
17	chr4:95538200-95555200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:95538200-95582600	Weak transcription	Hela-S3	cervix
19	chr4:95538200-95586600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:95538600-95587000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr4:95539000-95553600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:95539800-95561000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:95540000-95560600	Weak transcription	HepG2	liver
24	chr4:95540000-95566800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:95540000-95587000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr4:95540200-95597800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr4:95540400-95558600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:95540400-95561400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr4:95540400-95570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:95540600-95555000	Weak transcription	Ovary	ovary
31	chr4:95541000-95572600	Weak transcription	Small Intestine	intestine
32	chr4:95541200-95595600	Weak transcription	Primary T cells from cord blood	blood
33	chr4:95541400-95554800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:95541400-95558800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr4:95541400-95559200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr4:95541400-95560800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr4:95541400-95561200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr4:95541400-95580200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr4:95541600-95554800	Weak transcription	Right Ventricle	heart
40	chr4:95541600-95561600	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr4:95541600-95571400	Weak transcription	Fetal Muscle Leg	muscle
42	chr4:95541800-95555000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:95543000-95586000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr4:95543000-95586400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr4:95545000-95552600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr4:95545000-95561400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:95545200-95559400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr4:95545600-95560600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr4:95546000-95560400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr4:95546400-95552000	Weak transcription	NHEK	skin

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