Variant report

Variant	rs5013417
Chromosome Location	chr4:95503902-95503903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr4:95503744-95504020	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
PDLIM5	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10019142	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10019505	0.83[ASN][1000 genomes]
rs10033326	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs10034824	0.87[CHB][hapmap]
rs11723532	0.82[EUR][1000 genomes]
rs11724023	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs11725850	0.84[EUR][1000 genomes]
rs11732668	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs11732687	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs11734014	0.83[EUR][1000 genomes]
rs12500426	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs12639623	0.88[CEU][hapmap];0.80[CHB][hapmap]
rs12639887	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639980	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12641023	0.81[EUR][1000 genomes]
rs12642449	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648941	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12649976	0.96[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13122786	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13135257	0.96[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13143502	0.85[CHB][hapmap]
rs1543013	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs17394213	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2047025	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2172448	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2201092	0.86[EUR][1000 genomes]
rs2452580	0.81[CHB][hapmap]
rs2452601	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2510768	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2510769	0.90[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs28740868	0.93[EUR][1000 genomes]
rs34403066	0.81[EUR][1000 genomes]
rs34438564	0.81[EUR][1000 genomes]
rs35959898	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs3805263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805266	0.88[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3843444	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4634230	0.83[CEU][hapmap];0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs4699505	0.81[CHB][hapmap]
rs4699567	0.82[EUR][1000 genomes]
rs60063444	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60195134	0.81[EUR][1000 genomes]
rs6532491	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6829381	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs6854173	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs71601224	0.81[EUR][1000 genomes]
rs7662466	0.84[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7690296	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs7697149	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs902981	0.89[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs951613	0.80[CEU][hapmap]
rs973995	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95483400-95524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:95484000-95507400	Weak transcription	Hela-S3	cervix
3	chr4:95489000-95507400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:95489200-95506800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr4:95489200-95507400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:95489200-95509800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr4:95489400-95506200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:95489600-95508200	Weak transcription	GM12878-XiMat	blood
9	chr4:95489600-95522800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:95489600-95539200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:95493200-95540200	Weak transcription	Small Intestine	intestine
12	chr4:95493200-95584800	Weak transcription	Primary B cells from cord blood	blood
13	chr4:95494000-95506200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:95495200-95506800	Weak transcription	Fetal Stomach	stomach
15	chr4:95497200-95506400	Weak transcription	Left Ventricle	heart
16	chr4:95497200-95506800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:95497200-95506800	Weak transcription	Psoas Muscle	Psoas
18	chr4:95497200-95507400	Weak transcription	Primary T cells from cord blood	blood
19	chr4:95497200-95511000	Weak transcription	Ovary	ovary
20	chr4:95497200-95512600	Weak transcription	Aorta	Aorta
21	chr4:95497200-95512600	Weak transcription	Pancreas	Pancrea
22	chr4:95497200-95513800	Weak transcription	Right Ventricle	heart
23	chr4:95497200-95516200	Weak transcription	Right Atrium	heart
24	chr4:95497200-95520000	Weak transcription	Spleen	Spleen
25	chr4:95497200-95524600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:95497200-95524600	Weak transcription	Gastric	stomach
27	chr4:95497200-95524600	Weak transcription	Lung	lung
28	chr4:95497200-95526000	Weak transcription	Brain Angular Gyrus	brain
29	chr4:95497200-95553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:95497200-95569400	Weak transcription	Esophagus	oesophagus
31	chr4:95497400-95505000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr4:95497400-95505000	Weak transcription	Brain Substantia Nigra	brain
33	chr4:95497400-95506000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:95497400-95506800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr4:95497400-95506800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:95497400-95506800	Weak transcription	Adipose Nuclei	Adipose
37	chr4:95497400-95507600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:95497400-95510200	Weak transcription	Fetal Kidney	kidney
39	chr4:95497400-95513600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:95497400-95515000	Weak transcription	Colonic Mucosa	Colon
41	chr4:95497400-95524200	Weak transcription	NHLF	lung
42	chr4:95497400-95526200	Weak transcription	Brain Hippocampus Middle	brain
43	chr4:95497400-95542000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:95497600-95505200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:95497600-95506600	Weak transcription	Placenta	Placenta
46	chr4:95497600-95506800	Weak transcription	Fetal Muscle Leg	muscle
47	chr4:95497600-95507600	Weak transcription	K562	blood
48	chr4:95497600-95509200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr4:95497600-95510400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr4:95497600-95513600	Weak transcription	Fetal Muscle Trunk	muscle

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