Variant report

Variant	rs6532491
Chromosome Location	chr4:95507176-95507177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95506991..95508792-chr4:95517105..95519106,2	K562	blood:
2	chr4:95498533..95501686-chr4:95504980..95507488,3	K562	blood:

Variant related genes	Relation type
ENSG00000163110	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10019142	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10019505	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033326	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10034824	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12500426	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639623	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12639887	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12642449	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12648941	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13122786	0.83[ASN][1000 genomes]
rs2172448	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2452589	0.86[ASN][1000 genomes]
rs2452601	0.81[ASN][1000 genomes]
rs28740868	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805263	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3805264	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3805266	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3843444	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4634230	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5013417	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60063444	0.83[ASN][1000 genomes]
rs6854173	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7662466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs902981	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs973995	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95483400-95524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:95484000-95507400	Weak transcription	Hela-S3	cervix
3	chr4:95489000-95507400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:95489200-95507400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:95489200-95509800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr4:95489600-95508200	Weak transcription	GM12878-XiMat	blood
7	chr4:95489600-95522800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:95489600-95539200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:95493200-95540200	Weak transcription	Small Intestine	intestine
10	chr4:95493200-95584800	Weak transcription	Primary B cells from cord blood	blood
11	chr4:95497200-95507400	Weak transcription	Primary T cells from cord blood	blood
12	chr4:95497200-95511000	Weak transcription	Ovary	ovary
13	chr4:95497200-95512600	Weak transcription	Aorta	Aorta
14	chr4:95497200-95512600	Weak transcription	Pancreas	Pancrea
15	chr4:95497200-95513800	Weak transcription	Right Ventricle	heart
16	chr4:95497200-95516200	Weak transcription	Right Atrium	heart
17	chr4:95497200-95520000	Weak transcription	Spleen	Spleen
18	chr4:95497200-95524600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:95497200-95524600	Weak transcription	Gastric	stomach
20	chr4:95497200-95524600	Weak transcription	Lung	lung
21	chr4:95497200-95526000	Weak transcription	Brain Angular Gyrus	brain
22	chr4:95497200-95553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:95497200-95569400	Weak transcription	Esophagus	oesophagus
24	chr4:95497400-95507600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:95497400-95510200	Weak transcription	Fetal Kidney	kidney
26	chr4:95497400-95513600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr4:95497400-95515000	Weak transcription	Colonic Mucosa	Colon
28	chr4:95497400-95524200	Weak transcription	NHLF	lung
29	chr4:95497400-95526200	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:95497400-95542000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:95497600-95507600	Weak transcription	K562	blood
32	chr4:95497600-95509200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr4:95497600-95510400	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr4:95497600-95513600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr4:95497600-95539200	Weak transcription	HepG2	liver
36	chr4:95497800-95507400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr4:95497800-95508800	Weak transcription	Fetal Thymus	thymus
38	chr4:95498400-95526200	Weak transcription	Brain Anterior Caudate	brain
39	chr4:95498600-95513400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr4:95498800-95511800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr4:95499000-95507400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr4:95499000-95516400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr4:95499800-95510200	Weak transcription	NHDF-Ad	bronchial
44	chr4:95499800-95515400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr4:95501200-95510000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr4:95502800-95512600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:95503200-95516000	Weak transcription	Stomach Mucosa	stomach
48	chr4:95504000-95509800	Weak transcription	Fetal Heart	heart
49	chr4:95504200-95510400	Strong transcription	HUVEC	blood vessel
50	chr4:95504600-95517400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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