Variant report

Variant	rs28740868
Chromosome Location	chr4:95486094-95486095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95479917..95481634-chr4:95483291..95486276,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10019142	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10019505	0.90[ASN][1000 genomes]
rs10033326	0.83[ASN][1000 genomes]
rs10034824	0.83[ASN][1000 genomes]
rs1032420	0.86[ASN][1000 genomes]
rs11724023	0.81[EUR][1000 genomes]
rs11732687	0.82[EUR][1000 genomes]
rs12500426	0.90[ASN][1000 genomes]
rs12639623	0.83[ASN][1000 genomes]
rs12639887	0.90[EUR][1000 genomes]
rs12639980	0.85[EUR][1000 genomes]
rs12642449	0.82[EUR][1000 genomes]
rs12648941	0.89[ASN][1000 genomes]
rs12649976	0.84[EUR][1000 genomes]
rs13122786	0.81[EUR][1000 genomes]
rs13135257	0.85[EUR][1000 genomes]
rs13146878	0.86[ASN][1000 genomes]
rs17394213	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1972011	0.86[ASN][1000 genomes]
rs2047025	0.85[EUR][1000 genomes]
rs2172448	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2201092	0.85[EUR][1000 genomes]
rs2452008	0.86[ASN][1000 genomes]
rs2452571	0.82[ASN][1000 genomes]
rs2452580	0.86[ASN][1000 genomes]
rs2452582	0.86[ASN][1000 genomes]
rs2452584	0.86[ASN][1000 genomes]
rs2452585	0.86[ASN][1000 genomes]
rs2452586	0.86[ASN][1000 genomes]
rs2452589	0.95[ASN][1000 genomes]
rs2452601	0.89[EUR][1000 genomes]
rs2510768	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2510769	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2510772	0.88[ASN][1000 genomes]
rs2510774	0.85[ASN][1000 genomes]
rs2510776	0.86[ASN][1000 genomes]
rs2510777	0.86[ASN][1000 genomes]
rs2510780	0.82[ASN][1000 genomes]
rs3805263	0.93[EUR][1000 genomes]
rs3805264	0.92[EUR][1000 genomes]
rs3805266	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3843444	0.92[ASN][1000 genomes]
rs4634230	0.90[ASN][1000 genomes]
rs5013417	0.93[EUR][1000 genomes]
rs60063444	0.81[EUR][1000 genomes]
rs6532491	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6854173	0.82[ASN][1000 genomes]
rs7662466	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7697149	0.88[EUR][1000 genomes]
rs902981	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs973995	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95458200-95488800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:95463000-95487800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:95470000-95489200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:95470600-95489200	Weak transcription	Small Intestine	intestine
5	chr4:95479800-95491400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:95479800-95496800	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:95480600-95488000	Enhancers	Liver	Liver
8	chr4:95481200-95494600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:95481400-95496800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:95481400-95496800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:95483000-95486400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:95483200-95486200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:95483200-95488400	Enhancers	HUVEC	blood vessel
14	chr4:95483200-95488800	Weak transcription	K562	blood
15	chr4:95483400-95491600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:95483400-95491800	Weak transcription	Brain Anterior Caudate	brain
17	chr4:95483400-95496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:95483400-95496800	Weak transcription	NHEK	skin
19	chr4:95483400-95524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:95483600-95496200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:95483800-95488800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr4:95483800-95491800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:95483800-95496600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:95483800-95496800	Weak transcription	Gastric	stomach
25	chr4:95483800-95497000	Weak transcription	HMEC	breast
26	chr4:95484000-95488600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr4:95484000-95488800	Weak transcription	Adipose Nuclei	Adipose
28	chr4:95484000-95488800	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:95484000-95489000	Weak transcription	Stomach Mucosa	stomach
30	chr4:95484000-95491400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr4:95484000-95495600	Weak transcription	NH-A	brain
32	chr4:95484000-95496600	Weak transcription	HSMMtube	muscle
33	chr4:95484000-95507400	Weak transcription	Hela-S3	cervix
34	chr4:95484600-95496800	Weak transcription	HSMM	muscle
35	chr4:95484800-95486200	Enhancers	Fetal Intestine Large	intestine
36	chr4:95484800-95488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:95485000-95486400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:95485200-95486200	Enhancers	Left Ventricle	heart
39	chr4:95485400-95486200	Enhancers	Placenta	Placenta
40	chr4:95485400-95488200	Enhancers	Fetal Heart	heart
41	chr4:95485600-95486400	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr4:95485600-95488800	Weak transcription	Right Atrium	heart
43	chr4:95485600-95496600	Weak transcription	Ovary	ovary
44	chr4:95485800-95487200	Weak transcription	A549	lung
45	chr4:95485800-95488000	Enhancers	HepG2	liver
46	chr4:95485800-95488600	Weak transcription	Osteobl	bone
47	chr4:95485800-95488800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:95485800-95488800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr4:95485800-95495200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr4:95485800-95496800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links