Variant report

Variant	rs7697149
Chromosome Location	chr4:95491286-95491287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95370589..95373583-chr4:95489387..95491583,2	K562	blood:

Variant related genes	Relation type
ENSG00000163110	Chromatin interaction
ENSG00000203436	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10019142	0.81[AMR][1000 genomes]
rs11724023	0.81[EUR][1000 genomes]
rs11732687	0.83[EUR][1000 genomes]
rs12639887	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12639980	0.87[EUR][1000 genomes]
rs12642449	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12649976	0.83[EUR][1000 genomes]
rs13122786	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13135257	0.87[EUR][1000 genomes]
rs2047025	0.84[EUR][1000 genomes]
rs2201092	0.83[EUR][1000 genomes]
rs2452601	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28740868	0.88[EUR][1000 genomes]
rs3805263	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3805264	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5013417	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60063444	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs973995	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95479800-95491400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:95479800-95496800	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:95481200-95494600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:95481400-95496800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:95481400-95496800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:95483400-95491600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:95483400-95491800	Weak transcription	Brain Anterior Caudate	brain
8	chr4:95483400-95496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:95483400-95496800	Weak transcription	NHEK	skin
10	chr4:95483400-95524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:95483600-95496200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:95483800-95491800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:95483800-95496600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:95483800-95496800	Weak transcription	Gastric	stomach
15	chr4:95483800-95497000	Weak transcription	HMEC	breast
16	chr4:95484000-95491400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:95484000-95495600	Weak transcription	NH-A	brain
18	chr4:95484000-95496600	Weak transcription	HSMMtube	muscle
19	chr4:95484000-95507400	Weak transcription	Hela-S3	cervix
20	chr4:95484600-95496800	Weak transcription	HSMM	muscle
21	chr4:95485600-95496600	Weak transcription	Ovary	ovary
22	chr4:95485800-95495200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:95485800-95496800	Weak transcription	Psoas Muscle	Psoas
24	chr4:95485800-95496800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr4:95486000-95496800	Weak transcription	Aorta	Aorta
26	chr4:95486200-95495000	Weak transcription	Placenta	Placenta
27	chr4:95486200-95495200	Weak transcription	Left Ventricle	heart
28	chr4:95486400-95493200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:95486800-95496600	Weak transcription	Right Ventricle	heart
30	chr4:95487000-95495200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:95487000-95496600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:95488000-95491800	Weak transcription	HepG2	liver
33	chr4:95489000-95491600	Weak transcription	HUVEC	blood vessel
34	chr4:95489000-95492200	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:95489000-95496800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr4:95489000-95507400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr4:95489200-95496800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr4:95489200-95506800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:95489200-95507400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:95489200-95509800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr4:95489400-95491400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr4:95489400-95491400	Weak transcription	Fetal Intestine Large	intestine
43	chr4:95489400-95491400	Weak transcription	Fetal Intestine Small	intestine
44	chr4:95489400-95491400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr4:95489400-95491600	Weak transcription	Colon Smooth Muscle	Colon
46	chr4:95489400-95491600	Weak transcription	Fetal Heart	heart
47	chr4:95489400-95491600	Weak transcription	Stomach Mucosa	stomach
48	chr4:95489400-95491600	Weak transcription	A549	lung
49	chr4:95489400-95492600	Weak transcription	Small Intestine	intestine
50	chr4:95489400-95493000	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links