Variant report

Variant	rs2510768
Chromosome Location	chr4:95482053-95482054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:95474428..95476516-chr4:95479995..95482160,2	K562	blood:
2	chr4:95479530..95482092-chr4:95487778..95489313,2	K562	blood:
3	chr4:95472261..95474248-chr4:95480587..95483073,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10019142	0.80[ASN][1000 genomes]
rs12639887	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12642449	0.81[ASN][1000 genomes]
rs12645971	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13110115	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13122786	0.81[ASN][1000 genomes]
rs13143502	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17394213	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2452010	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2452570	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2452574	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2452575	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2452576	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2452577	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2452589	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2452601	0.82[ASN][1000 genomes]
rs2510769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510772	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2510775	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2510779	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2510781	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28740868	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3792666	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3805263	0.81[ASN][1000 genomes]
rs3805264	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3805285	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4699505	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4699533	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5013417	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs60063444	0.84[AFR][1000 genomes]
rs902981	0.81[ASN][1000 genomes]
rs973995	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95422400-95482800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:95457400-95485400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:95458200-95483000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:95458200-95488800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:95463000-95487800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:95470000-95489200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:95470400-95482600	Weak transcription	HepG2	liver
8	chr4:95470400-95484800	Weak transcription	Fetal Intestine Large	intestine
9	chr4:95470600-95483600	Weak transcription	Fetal Intestine Small	intestine
10	chr4:95470600-95489200	Weak transcription	Small Intestine	intestine
11	chr4:95479200-95484000	Enhancers	Fetal Heart	heart
12	chr4:95479400-95483400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:95479400-95484000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr4:95479400-95484000	Enhancers	NH-A	brain
15	chr4:95479400-95484600	Enhancers	Osteobl	bone
16	chr4:95479800-95491400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:95479800-95496800	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:95480200-95483800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:95480200-95483800	Enhancers	HMEC	breast
20	chr4:95480200-95484000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr4:95480400-95482600	Enhancers	Adipose Nuclei	Adipose
22	chr4:95480400-95483400	Enhancers	NHLF	lung
23	chr4:95480600-95482200	Enhancers	Psoas Muscle	Psoas
24	chr4:95480600-95482400	Enhancers	Right Atrium	heart
25	chr4:95480600-95482600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:95480600-95483800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr4:95480600-95488000	Enhancers	Liver	Liver
28	chr4:95480800-95483000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:95481000-95482200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:95481000-95483600	Enhancers	NHDF-Ad	bronchial
31	chr4:95481000-95484400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:95481200-95482200	Enhancers	Left Ventricle	heart
33	chr4:95481200-95482800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:95481200-95494600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:95481400-95482400	Weak transcription	K562	blood
36	chr4:95481400-95482600	Weak transcription	Colon Smooth Muscle	Colon
37	chr4:95481400-95482800	Weak transcription	NHEK	skin
38	chr4:95481400-95483200	Weak transcription	Right Ventricle	heart
39	chr4:95481400-95484000	Enhancers	HSMMtube	muscle
40	chr4:95481400-95485200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr4:95481400-95496800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr4:95481400-95496800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr4:95481600-95482200	Enhancers	HUVEC	blood vessel
44	chr4:95481600-95482800	Weak transcription	Brain Anterior Caudate	brain
45	chr4:95481600-95483600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr4:95481600-95484000	Enhancers	Hela-S3	cervix
47	chr4:95481800-95482400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:95481800-95482600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr4:95481800-95483000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:95481800-95484600	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links