Variant report

Variant	rs10033326
Chromosome Location	chr4:95526241-95526242
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10019142	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10019505	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10034824	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11724023	0.88[CEU][hapmap]
rs11732687	0.88[CEU][hapmap]
rs12500426	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12639623	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12639887	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs12639980	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12642449	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs12648941	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12649976	0.92[CEU][hapmap];0.87[CHB][hapmap];0.81[EUR][1000 genomes]
rs13122786	0.83[CEU][hapmap];0.87[CHB][hapmap]
rs13135257	0.89[CEU][hapmap];0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2047025	0.90[CEU][hapmap];0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2172448	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2452571	0.83[CHB][hapmap]
rs2452578	0.82[CHB][hapmap]
rs2452580	0.91[CHB][hapmap]
rs2452601	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs2510769	0.91[CHB][hapmap]
rs2510772	0.86[CHB][hapmap]
rs2510777	0.82[CHB][hapmap]
rs28740868	0.83[ASN][1000 genomes]
rs3805263	0.89[CEU][hapmap];0.91[CHB][hapmap]
rs3805266	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3843444	0.89[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4634230	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5013417	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs6532491	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6853490	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6854173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7662466	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs902981	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95489600-95539200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:95493200-95540200	Weak transcription	Small Intestine	intestine
3	chr4:95493200-95584800	Weak transcription	Primary B cells from cord blood	blood
4	chr4:95497200-95553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:95497200-95569400	Weak transcription	Esophagus	oesophagus
6	chr4:95497400-95542000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:95497600-95539200	Weak transcription	HepG2	liver
8	chr4:95507200-95548200	Weak transcription	Psoas Muscle	Psoas
9	chr4:95507200-95548600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:95507800-95539200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:95511200-95554800	Weak transcription	NHDF-Ad	bronchial
12	chr4:95513000-95539000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:95514200-95539200	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:95514400-95539200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:95514400-95544600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:95514600-95530800	Weak transcription	Primary T cells from cord blood	blood
17	chr4:95514600-95539200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:95514600-95542600	Weak transcription	NHEK	skin
19	chr4:95514800-95527400	Weak transcription	Pancreas	Pancrea
20	chr4:95514800-95531200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:95514800-95532200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:95514800-95539000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:95515000-95538600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:95515000-95562000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:95520600-95532200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:95521000-95529800	Weak transcription	HMEC	breast
27	chr4:95521400-95529000	Weak transcription	Liver	Liver
28	chr4:95521400-95531200	Weak transcription	Fetal Intestine Large	intestine
29	chr4:95521600-95528400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:95521600-95528800	Weak transcription	HSMM	muscle
31	chr4:95521600-95544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:95522200-95538200	Weak transcription	Placenta	Placenta
33	chr4:95522400-95532200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:95524000-95527200	Enhancers	HUVEC	blood vessel
35	chr4:95524200-95526800	Enhancers	Fetal Heart	heart
36	chr4:95525000-95526400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:95525000-95531400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:95525000-95533600	Weak transcription	Gastric	stomach
39	chr4:95525000-95538600	Weak transcription	Fetal Intestine Small	intestine
40	chr4:95525000-95538600	Weak transcription	Right Ventricle	heart
41	chr4:95525000-95539200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:95525000-95539200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr4:95525000-95569600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr4:95525000-95586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:95525000-95590000	Weak transcription	Lung	lung
46	chr4:95525200-95526800	Strong transcription	Osteobl	bone
47	chr4:95525400-95539200	Weak transcription	HSMMtube	muscle
48	chr4:95525400-95562200	Weak transcription	NHLF	lung
49	chr4:95525600-95528800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr4:95525600-95531200	Weak transcription	Left Ventricle	heart

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