Variant report

Variant	rs11725943
Chromosome Location	chr4:87180112-87180113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87179144..87180691-chr4:87183736..87185339,2	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10516768	1.00[YRI][hapmap]
rs11097099	0.93[ASW][hapmap];0.84[LWK][hapmap];0.95[YRI][hapmap]
rs11097100	0.93[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap]
rs11931070	0.88[AFR][1000 genomes]
rs11944466	1.00[YRI][hapmap]
rs11947870	0.83[AFR][1000 genomes]
rs12498902	0.83[AFR][1000 genomes]
rs12498923	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12498980	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12499006	0.83[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12499209	0.81[AFR][1000 genomes]
rs12500023	0.83[AFR][1000 genomes]
rs12501090	0.82[AFR][1000 genomes]
rs12501551	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12504127	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12504532	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12505336	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12505532	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs12505959	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12506828	0.83[AFR][1000 genomes]
rs12508286	1.00[YRI][hapmap]
rs12508372	1.00[YRI][hapmap]
rs12509960	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12510302	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12510373	0.93[YRI][hapmap]
rs12511499	0.81[AFR][1000 genomes]
rs12511602	0.81[AFR][1000 genomes]
rs12512375	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap]
rs12513122	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs12513237	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12513374	1.00[YRI][hapmap]
rs1380923	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16996040	0.80[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17011396	1.00[YRI][hapmap]
rs17011397	1.00[YRI][hapmap]
rs17011400	1.00[YRI][hapmap]
rs17011409	1.00[YRI][hapmap]
rs17011410	1.00[YRI][hapmap]
rs17011419	0.81[YRI][hapmap]
rs17011428	1.00[YRI][hapmap]
rs17011432	1.00[YRI][hapmap]
rs17011445	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap]
rs17011457	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011458	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011459	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011467	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011472	0.93[ASW][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011479	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011487	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011489	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011492	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011516	0.93[ASW][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011519	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011522	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011526	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011533	0.85[AFR][1000 genomes]
rs17011537	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs17011551	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17011611	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17253274	0.93[ASW][hapmap];0.80[LWK][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs1903362	1.00[YRI][hapmap]
rs1903363	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap]
rs35826931	0.97[AFR][1000 genomes]
rs4434210	0.81[AFR][1000 genomes]
rs4499692	1.00[YRI][hapmap]
rs4693753	0.85[CHB][hapmap]
rs5004884	1.00[YRI][hapmap]
rs55802491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810839	0.86[ASW][hapmap];0.80[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6810895	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6810953	0.83[AFR][1000 genomes]
rs6811046	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6818726	0.81[AFR][1000 genomes]
rs6831733	0.83[AFR][1000 genomes]
rs6851183	1.00[YRI][hapmap]
rs6853248	0.81[AFR][1000 genomes]
rs7661197	0.83[AFR][1000 genomes]
rs7670728	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7678392	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7679167	0.82[AFR][1000 genomes]
rs7687161	0.94[YRI][hapmap];0.97[AFR][1000 genomes]
rs7688495	0.83[AFR][1000 genomes]
rs7699144	0.83[AFR][1000 genomes]
rs7699333	0.94[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv2763374	chr4:87151085-87184332	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87149200-87186200	Weak transcription	Ovary	ovary
2	chr4:87155200-87185400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:87179200-87185400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:87179800-87183800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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