Variant report
Variant | rs17011611 |
---|---|
Chromosome Location | chr4:87172144-87172145 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:87155810..87157593-chr4:87170077..87172350,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10516768 | 1.00[YRI][hapmap] |
rs11097099 | 0.94[YRI][hapmap] |
rs11097100 | 1.00[YRI][hapmap] |
rs11725943 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
rs11931070 | 0.90[AFR][1000 genomes] |
rs11944466 | 1.00[YRI][hapmap] |
rs11947870 | 0.85[AFR][1000 genomes] |
rs12498902 | 0.85[AFR][1000 genomes] |
rs12498923 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs12498980 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs12499006 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs12499209 | 0.81[AFR][1000 genomes] |
rs12500023 | 0.83[AFR][1000 genomes] |
rs12501090 | 0.82[AFR][1000 genomes] |
rs12501551 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs12504127 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs12505336 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes] |
rs12505532 | 0.95[YRI][hapmap];0.83[AFR][1000 genomes] |
rs12505959 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs12506828 | 0.83[AFR][1000 genomes] |
rs12508286 | 1.00[YRI][hapmap] |
rs12508372 | 1.00[YRI][hapmap] |
rs12509960 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs12510302 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs12510373 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
rs12511499 | 0.81[AFR][1000 genomes] |
rs12511602 | 0.81[AFR][1000 genomes] |
rs12512375 | 1.00[YRI][hapmap] |
rs12513122 | 0.94[YRI][hapmap];0.85[AFR][1000 genomes] |
rs12513237 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs12513374 | 1.00[YRI][hapmap] |
rs1380923 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
rs16996040 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
rs17011396 | 1.00[YRI][hapmap] |
rs17011397 | 1.00[YRI][hapmap] |
rs17011400 | 1.00[YRI][hapmap] |
rs17011409 | 1.00[YRI][hapmap] |
rs17011410 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
rs17011419 | 0.86[YRI][hapmap] |
rs17011428 | 1.00[YRI][hapmap] |
rs17011432 | 1.00[YRI][hapmap] |
rs17011445 | 1.00[YRI][hapmap] |
rs17011457 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs17011458 | 0.94[YRI][hapmap];0.83[AFR][1000 genomes] |
rs17011459 | 0.94[YRI][hapmap];0.83[AFR][1000 genomes] |
rs17011467 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs17011472 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs17011479 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs17011487 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs17011489 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs17011492 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs17011516 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs17011519 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs17011522 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs17011526 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs17011533 | 0.83[AFR][1000 genomes] |
rs17011537 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
rs17011551 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs17253274 | 0.94[YRI][hapmap];0.83[AFR][1000 genomes] |
rs1903362 | 1.00[YRI][hapmap] |
rs1903363 | 1.00[YRI][hapmap] |
rs35826931 | 0.94[AFR][1000 genomes] |
rs4434210 | 0.81[AFR][1000 genomes] |
rs4499692 | 1.00[YRI][hapmap] |
rs5004884 | 1.00[YRI][hapmap] |
rs55802491 | 0.91[AFR][1000 genomes] |
rs6531928 | 1.00[EUR][1000 genomes] |
rs6810839 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs6810895 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs6810953 | 0.85[AFR][1000 genomes] |
rs6811046 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs6818726 | 0.81[AFR][1000 genomes] |
rs6831733 | 0.85[AFR][1000 genomes] |
rs6851183 | 1.00[YRI][hapmap] |
rs6853248 | 0.83[AFR][1000 genomes] |
rs6855234 | 1.00[EUR][1000 genomes] |
rs73834001 | 1.00[EUR][1000 genomes] |
rs7661197 | 0.85[AFR][1000 genomes] |
rs7670728 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
rs7678392 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes] |
rs7679167 | 0.86[AFR][1000 genomes] |
rs7687161 | 0.95[YRI][hapmap];0.94[AFR][1000 genomes] |
rs7688495 | 0.85[AFR][1000 genomes] |
rs7699144 | 0.85[AFR][1000 genomes] |
rs7699333 | 0.95[YRI][hapmap];0.85[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1003585 | chr4:86957967-87250436 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv594786 | chr4:87076360-87609320 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
3 | esv2763374 | chr4:87151085-87184332 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv999470 | chr4:87165663-87514552 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv537164 | chr4:87165663-87514552 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:87149200-87186200 | Weak transcription | Ovary | ovary |
2 | chr4:87155200-87185400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
3 | chr4:87164800-87176200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
4 | chr4:87168200-87178800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
5 | chr4:87169000-87176000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
6 | chr4:87170600-87172200 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
7 | chr4:87172000-87172200 | Enhancers | HSMMtube | muscle |