Variant report

Variant	rs11728570
Chromosome Location	chr4:95747400-95747401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10000023	0.90[ASN][1000 genomes]
rs10008126	0.97[ASN][1000 genomes]
rs1003910	0.96[ASN][1000 genomes]
rs12503136	0.97[ASN][1000 genomes]
rs13120681	0.97[ASN][1000 genomes]
rs13128703	0.89[ASN][1000 genomes]
rs17022328	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28429408	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28501174	0.97[ASN][1000 genomes]
rs28827191	0.84[ASN][1000 genomes]
rs4077885	0.97[ASN][1000 genomes]
rs4490463	0.90[ASN][1000 genomes]
rs7658915	0.97[ASN][1000 genomes]
rs7668820	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7692640	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv518579	chr4:95706337-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594906	chr4:95713679-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1007391	chr4:95713679-95763860	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002004	chr4:95717063-95755436	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999588	chr4:95717063-95763860	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv997960	chr4:95719585-95766067	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv537188	chr4:95719585-95766067	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95741600-95748800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:95744400-95747400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:95746400-95747600	Enhancers	Thymus	Thymus
4	chr4:95746600-95748400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:95747200-95747400	Enhancers	A549	lung
6	chr4:95747200-95747800	Flanking Active TSS	Dnd41	blood
7	chr4:95747200-95748600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:95747200-95749000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:95747200-95749200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:95747400-95747600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:95747400-95747600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:95747400-95747600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:95747400-95747600	Enhancers	Aorta	Aorta
14	chr4:95747400-95747600	Enhancers	Brain Anterior Caudate	brain
15	chr4:95747400-95747600	Enhancers	Psoas Muscle	Psoas
16	chr4:95747400-95747800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:95747400-95747800	Enhancers	Rectal Smooth Muscle	rectum
18	chr4:95747400-95747800	Flanking Active TSS	A549	lung
19	chr4:95747400-95748400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:95747400-95748600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:95747400-95748800	Enhancers	HUVEC	blood vessel
22	chr4:95747400-95749200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:95747400-95749800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:95747400-95749800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:95747400-95751000	Enhancers	NHEK	skin

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