Variant report

Variant	rs13128703
Chromosome Location	chr4:95770056-95770057
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95763923..95766773-chr4:95768143..95770338,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10000023	0.81[CHB][hapmap];0.88[CHD][hapmap];0.85[ASN][1000 genomes]
rs10008126	0.86[CHB][hapmap];0.93[CHD][hapmap];0.92[ASN][1000 genomes]
rs10018997	0.80[CHB][hapmap]
rs1003910	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11728570	0.89[ASN][1000 genomes]
rs12503136	0.86[CHB][hapmap];0.93[CHD][hapmap];0.92[ASN][1000 genomes]
rs13120681	0.86[CHB][hapmap];0.92[ASN][1000 genomes]
rs17022328	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17582232	0.89[CEU][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28429408	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28501174	0.92[ASN][1000 genomes]
rs28827191	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34037032	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34371309	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4077885	0.86[CHB][hapmap];0.93[CHD][hapmap];0.92[ASN][1000 genomes]
rs4456963	0.82[MEX][hapmap]
rs4490463	0.85[ASN][1000 genomes]
rs61706867	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62316168	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7658915	0.92[ASN][1000 genomes]
rs7668820	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7692640	0.86[CHB][hapmap];0.90[CHD][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95765600-95770200	Weak transcription	Thymus	Thymus
2	chr4:95766200-95770400	Weak transcription	Fetal Thymus	thymus
3	chr4:95767800-95770200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:95768800-95789600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:95769000-95789600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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