Variant report

Variant	rs62316168
Chromosome Location	chr4:95767018-95767019
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1003910	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13123698	0.83[AFR][1000 genomes]
rs13128703	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13144015	0.80[EUR][1000 genomes]
rs17022328	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28429408	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28827191	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34037032	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34371309	0.82[EUR][1000 genomes]
rs4456963	0.81[AMR][1000 genomes]
rs56997372	0.81[ASN][1000 genomes]
rs61706867	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7668820	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7673420	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95763200-95769800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:95765000-95767200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:95765600-95770200	Weak transcription	Thymus	Thymus
4	chr4:95766200-95770400	Weak transcription	Fetal Thymus	thymus
5	chr4:95766800-95767400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links