Variant report

Variant	rs11729011
Chromosome Location	chr4:54583275-54583276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54581907..54583610-chr4:54615886..54618732,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11724329	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734118	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28450016	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28468594	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs747258	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9312645	0.88[ASN][1000 genomes]
rs9684467	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54577600-54584000	Enhancers	Osteobl	bone
2	chr4:54577800-54583600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:54578800-54583400	Weak transcription	Aorta	Aorta
4	chr4:54579800-54583400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:54580200-54583800	Enhancers	NHLF	lung
6	chr4:54580400-54583600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:54580400-54583800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:54580400-54583800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:54581400-54583800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:54582000-54584400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:54582200-54584000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:54582600-54584200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr4:54582800-54583400	Enhancers	Fetal Stomach	stomach
14	chr4:54582800-54583400	Enhancers	HSMMtube	muscle
15	chr4:54582800-54584000	Enhancers	NHDF-Ad	bronchial
16	chr4:54583000-54583400	Enhancers	Right Atrium	heart
17	chr4:54583000-54583800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr4:54583000-54584200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr4:54583000-54584400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:54583200-54583400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr4:54583200-54583400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:54583200-54583600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:54583200-54584600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:54583200-54587400	Weak transcription	HSMM	muscle

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