Variant report

Variant	rs28468594
Chromosome Location	chr4:54579650-54579651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11724329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11729011	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11734118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28450016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs747258	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9312645	0.85[ASN][1000 genomes]
rs9684467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569600-54580200	Weak transcription	HSMM	muscle
2	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:54573200-54580200	Weak transcription	NHLF	lung
4	chr4:54573200-54581400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:54577400-54581200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:54577400-54581400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:54577600-54584000	Enhancers	Osteobl	bone
8	chr4:54577800-54579800	Enhancers	Fetal Muscle Leg	muscle
9	chr4:54577800-54581400	Enhancers	NHDF-Ad	bronchial
10	chr4:54577800-54583600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:54578400-54582800	Weak transcription	Fetal Stomach	stomach
12	chr4:54578800-54580400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:54578800-54580400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:54578800-54583400	Weak transcription	Aorta	Aorta
15	chr4:54579000-54579800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:54579000-54583000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:54579200-54580400	Weak transcription	NH-A	brain
18	chr4:54579200-54580600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:54579400-54580400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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