Variant report

Variant	rs1172932
Chromosome Location	chr9:93518329-93518330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:126)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:126 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr9:93518037-93518382	A549	lung:	n/a	n/a
2	CTCF	chr9:93518180-93518330	GM12865	blood:	n/a	n/a
3	CTCF	chr9:93518124-93518434	MCF-7	breast:	n/a	n/a
4	RAD21	chr9:93518103-93518390	A549	lung:	n/a	n/a
5	CTCF	chr9:93518050-93518487	A549	lung:	n/a	n/a
6	CTCF	chr9:93518096-93518375	GM10266	blood:	n/a	n/a
7	CTCF	chr9:93518094-93518401	K562	blood:	n/a	n/a
8	CTCF	chr9:93518016-93518431	T-47D	breast:	n/a	n/a
9	RAD21	chr9:93517954-93518385	H1-hESC	embryonic stem cell:	n/a	n/a
10	CTCF	chr9:93518180-93518330	BE2_C	brain:	n/a	n/a
11	CTCF	chr9:93518156-93518349	Hela-S3	cervix:	n/a	n/a
12	CTCF	chr9:93518180-93518330	WI-38	lung:	n/a	n/a
13	RAD21	chr9:93518107-93518445	ECC-1	luminal epithelium:	n/a	n/a
14	FOS	chr9:93518094-93518383	MCF10A-Er-Src	breast:	n/a	n/a
15	FOS	chr9:93518101-93518384	MCF10A-Er-Src	breast:	n/a	n/a
16	CTCF	chr9:93518188-93518344	Lung_OC	lung:	n/a	n/a
17	CTCF	chr9:93518162-93518350	GM20000	blood:	n/a	n/a
18	SPI1	chr9:93518288-93518649	GM12891	blood:	n/a	n/a
19	CTCF	chr9:93518138-93518377	GM13976	blood:	n/a	n/a
20	RAD21	chr9:93518095-93518388	GM12878	blood:	n/a	n/a
21	CTCF	chr9:93518088-93518339	GM12892	blood:	n/a	n/a
22	BCLAF1	chr9:93518136-93518397	GM12878	blood:	n/a	n/a
23	RAD21	chr9:93518101-93518498	HCT-116	colon:	n/a	n/a
24	TEAD4	chr9:93518103-93518350	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr9:93518180-93518330	HFF-Myc	foreskin:	n/a	n/a
26	BATF	chr9:93518120-93518393	GM12878	blood:	n/a	n/a
27	CTCF	chr9:93518180-93518330	A549	lung:	n/a	n/a
28	CTCF	chr9:93518013-93518404	H1-hESC	embryonic stem cell:	n/a	n/a
29	JUND	chr9:93518062-93518381	H1-hESC	embryonic stem cell:	n/a	n/a
30	JUND	chr9:93517967-93518383	A549	lung:	n/a	n/a
31	CTCF	chr9:93518108-93518378	GM13977	blood:	n/a	n/a
32	CTCF	chr9:93518050-93518427	A549	lung:	n/a	n/a
33	RELA	chr9:93518024-93518460	GM12891	blood:	n/a	n/a
34	CTCF	chr9:93518129-93518410	Pancreas_OC	pancreas:	n/a	n/a
35	CTCF	chr9:93518018-93518528	A549	lung:	n/a	n/a
36	RAD21	chr9:93518092-93518372	HepG2	liver:	n/a	n/a
37	RAD21	chr9:93518105-93518469	ECC-1	luminal epithelium:	n/a	n/a
38	RAD21	chr9:93518095-93518398	IMR90	lung:	n/a	n/a
39	RELA	chr9:93518021-93518389	GM19193	blood:	n/a	n/a
40	RAD21	chr9:93518113-93518397	HepG2	liver:	n/a	n/a
41	FOSL2	chr9:93518046-93518401	HepG2	liver:	n/a	n/a
42	CTCF	chr9:93518098-93518418	IMR90	lung:	n/a	n/a
43	FOXM1	chr9:93518012-93518474	GM12878	blood:	n/a	n/a
44	RELA	chr9:93518099-93518411	GM10847	blood:	n/a	n/a
45	RAD21	chr9:93518030-93518469	H1-hESC	embryonic stem cell:	n/a	n/a
46	ZNF143	chr9:93518180-93518384	H1-hESC	embryonic stem cell:	n/a	n/a
47	CTCF	chr9:93518180-93518330	GM12872	blood:	n/a	n/a
48	RAD21	chr9:93518105-93518457	A549	lung:	n/a	n/a
49	SPI1	chr9:93518284-93518592	GM12878	blood:	n/a	n/a
50	CTCF	chr9:93518035-93518565	SK-N-SH	brain:	n/a	n/a

No data

Variant related genes	Relation type
OR7E108P	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1148846	0.90[ASN][1000 genomes]
rs1148847	0.89[ASN][1000 genomes]
rs1148848	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1148850	0.87[ASN][1000 genomes]
rs1172894	0.88[ASN][1000 genomes]
rs1172911	0.81[ASN][1000 genomes]
rs1172912	0.81[ASN][1000 genomes]
rs1172918	0.88[ASN][1000 genomes]
rs1172928	0.86[ASN][1000 genomes]
rs1172929	0.86[ASN][1000 genomes]
rs1184620	0.86[ASN][1000 genomes]
rs2810918	0.81[ASN][1000 genomes]
rs2810924	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv482757	chr9:93356095-93543903	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv968728	chr9:93494212-93532434	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93517400-93518400	Enhancers	Placenta	Placenta
2	chr9:93517600-93518600	Enhancers	Duodenum Mucosa	Duodenum
3	chr9:93518000-93518400	Enhancers	Stomach Mucosa	stomach
4	chr9:93518000-93518600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:93518000-93518600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr9:93518000-93518600	Enhancers	Fetal Thymus	thymus
7	chr9:93518000-93518800	Enhancers	Primary B cells from peripheral blood	blood
8	chr9:93518000-93519600	Enhancers	Fetal Intestine Small	intestine

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