Variant report

Variant	rs1172941
Chromosome Location	chr10:97894685-97894686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
2	chr10:97802289..97805313-chr10:97893029..97895743,3	MCF-7	breast:
3	chr10:97887805..97893654-chr10:97893672..97904604,20	MCF-7	breast:
4	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
5	chr10:97848496..97850292-chr10:97893666..97896011,2	MCF-7	breast:
6	chr10:97802862..97805613-chr10:97893872..97896064,2	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11188577	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1172938	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1172939	1.00[AMR][1000 genomes]
rs1172947	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1172950	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1172951	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1172957	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1172959	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260724	0.88[AFR][1000 genomes]
rs2446024	0.85[AFR][1000 genomes]
rs6584051	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6584054	0.85[AFR][1000 genomes]
rs7085423	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7086164	0.87[AFR][1000 genomes]
rs7094773	1.00[AMR][1000 genomes]
rs7099008	0.84[AFR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97911200	Weak transcription	Gastric	stomach
2	chr10:97890600-97911200	Weak transcription	Spleen	Spleen
3	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
4	chr10:97890800-97895600	Weak transcription	Hela-S3	cervix
5	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
7	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:97891000-97896400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:97891000-97896600	Weak transcription	Aorta	Aorta
10	chr10:97891000-97906400	Weak transcription	Right Ventricle	heart
11	chr10:97891000-97906600	Weak transcription	Psoas Muscle	Psoas
12	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
13	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:97891200-97911000	Weak transcription	HSMMtube	muscle
16	chr10:97891200-97911400	Weak transcription	Fetal Brain Male	brain
17	chr10:97891400-97911000	Weak transcription	Brain Anterior Caudate	brain
18	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr10:97891400-97918200	Weak transcription	NHLF	lung
20	chr10:97891600-97896400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:97891600-97896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:97891600-97896600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:97891600-97911200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
25	chr10:97891800-97895200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
27	chr10:97892000-97895400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:97892000-97896200	Weak transcription	Fetal Intestine Small	intestine
29	chr10:97892000-97912200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:97892400-97898600	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr10:97892400-97901400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr10:97892400-97909600	Strong transcription	Primary B cells from peripheral blood	blood
33	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:97892600-97896600	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr10:97892600-97898200	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:97892600-97907800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:97892600-97909800	Strong transcription	Liver	Liver
38	chr10:97892800-97896400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr10:97892800-97898400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr10:97892800-97907800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr10:97892800-97909400	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:97893000-97894800	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:97893000-97895000	Strong transcription	Brain Cingulate Gyrus	brain
45	chr10:97893000-97895200	Strong transcription	GM12878-XiMat	blood
46	chr10:97893000-97895400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:97893000-97895400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:97893000-97895400	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:97893000-97895800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:97893000-97897600	Strong transcription	Fetal Lung	lung

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