Variant report
| Variant | rs1172957 |
|---|---|
| Chromosome Location | chr10:97875397-97875398 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:97874266..97876625-chr10:97879837..97881819,3 | K562 | blood: | |
| 2 | chr10:97848703..97850318-chr10:97874248..97876781,2 | MCF-7 | breast: | |
| 3 | chr10:97871595..97874047-chr10:97875206..97878090,4 | K562 | blood: | |
| 4 | chr10:97875384..97878140-chr10:97888337..97891215,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000200728 | Chromatin interaction |
| ENSG00000177853 | Chromatin interaction |
| ENSG00000226688 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11188577 | 0.95[AFR][1000 genomes] |
| rs1172938 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1172939 | 1.00[AMR][1000 genomes] |
| rs1172941 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1172947 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1172950 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1172951 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1172959 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12260724 | 0.93[AFR][1000 genomes] |
| rs6584051 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7085423 | 0.96[AFR][1000 genomes] |
| rs7086164 | 0.92[AFR][1000 genomes] |
| rs7094773 | 1.00[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
