Variant report

Variant	rs117317718
Chromosome Location	chr19:43139357-43139358
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:43139240-43139390	HAc	cerebellar:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
2	MAX	chr19:43139248-43139363	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr19:43139097-43139377	HepG2	liver:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
4	CTCF	chr19:43139126-43139447	GM19240	blood:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
5	BHLHE40	chr19:43139176-43139401	K562	blood:	n/a	n/a
6	MAZ	chr19:43138995-43139565	IMR90	lung:	n/a	n/a
7	HCFC1	chr19:43139216-43139368	K562	blood:	n/a	n/a
8	CTCF	chr19:43139140-43139400	HepG2	liver:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
9	SMC3	chr19:43139130-43139448	GM12878	blood:	n/a	chr19:43139259-43139273
10	RAD21	chr19:43139128-43139418	SK-N-SH_RA	brain:	n/a	chr19:43139262-43139271 chr19:43139261-43139274 chr19:43139258-43139277 chr19:43139260-43139267
11	MYC	chr19:43139155-43139420	K562	blood:	n/a	n/a
12	RAD21	chr19:43139134-43139563	MCF-7	breast:	n/a	chr19:43139262-43139271 chr19:43139261-43139274 chr19:43139258-43139277 chr19:43139260-43139267
13	CTCF	chr19:43139113-43139437	K562	blood:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
14	MYC	chr19:43139301-43139439	MCF10A-Er-Src	breast:	n/a	n/a
15	CTCF	chr19:43139114-43139409	NHEK	skin:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
16	CTCF	chr19:43139220-43139370	SAEC	small airway:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
17	RAD21	chr19:43138964-43139594	HCT-116	colon:	n/a	chr19:43139262-43139271 chr19:43139261-43139274 chr19:43139258-43139277 chr19:43139260-43139267
18	MAFK	chr19:43139178-43139439	Hela-S3	cervix:	n/a	n/a
19	RAD21	chr19:43139138-43139455	GM12878	blood:	n/a	chr19:43139262-43139271 chr19:43139261-43139274 chr19:43139258-43139277 chr19:43139260-43139267
20	CTCF	chr19:43139155-43139369	GM13977	blood:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
21	CTCF	chr19:43139146-43139373	MCF-7	breast:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
22	ZNF143	chr19:43139091-43139428	K562	blood:	n/a	n/a
23	RAD21	chr19:43139024-43139462	H1-hESC	embryonic stem cell:	n/a	chr19:43139262-43139271 chr19:43139261-43139274 chr19:43139258-43139277 chr19:43139260-43139267
24	CTCF	chr19:43139220-43139370	HVMF	connective:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
25	YY1	chr19:43139026-43139628	A549	lung:	n/a	n/a
26	CTCF	chr19:43139134-43139375	HepG2	liver:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
27	CTCF	chr19:43138873-43139584	HCT-116	colon:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
28	CTCF	chr19:43139144-43139378	GM10248	blood:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
29	CTCF	chr19:43139117-43139401	K562	blood:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
30	CTCF	chr19:43139220-43139370	HCM	heart:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
31	CTCF	chr19:43139220-43139370	GM12864	blood:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
32	RAD21	chr19:43139138-43139392	K562	blood:	n/a	chr19:43139262-43139271 chr19:43139261-43139274 chr19:43139258-43139277 chr19:43139260-43139267
33	TBP	chr19:43139189-43139367	K562	blood:	n/a	n/a
34	CTCF	chr19:43139177-43139368	GM13976	blood:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
35	CTCF	chr19:43138945-43139393	GM19239	blood:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
36	CTCF	chr19:43138925-43139430	GM12892	blood:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
37	YY1	chr19:43139112-43139514	SK-N-SH	brain:	n/a	n/a
38	SMC3	chr19:43139118-43139375	HepG2	liver:	n/a	chr19:43139259-43139273
39	CTCF	chr19:43139220-43139370	HRE	kidney:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
40	RAD21	chr19:43139156-43139499	ECC-1	luminal epithelium:	n/a	chr19:43139262-43139271 chr19:43139261-43139274 chr19:43139258-43139277 chr19:43139260-43139267
41	CTCF	chr19:43139108-43139415	Gliobla	brain:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
42	RAD21	chr19:43139167-43139440	HepG2	liver:	n/a	chr19:43139262-43139271 chr19:43139261-43139274 chr19:43139258-43139277 chr19:43139260-43139267
43	CTCF	chr19:43139042-43139421	A549	lung:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
44	YY1	chr19:43139143-43139481	HepG2	liver:	n/a	n/a
45	CTCF	chr19:43139154-43139438	Lung_OC	lung:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275
46	RAD21	chr19:43139106-43139459	GM12878	blood:	n/a	chr19:43139262-43139271 chr19:43139261-43139274 chr19:43139258-43139277 chr19:43139260-43139267
47	TBL1XR1	chr19:43139259-43139454	K562	blood:	n/a	n/a
48	YY1	chr19:43139155-43139462	GM12891	blood:	n/a	n/a
49	YY1	chr19:43139195-43139505	ECC-1	luminal epithelium:	n/a	n/a
50	CTCF	chr19:43139220-43139370	GM12870	blood:	n/a	chr19:43139262-43139270 chr19:43139259-43139280 chr19:43139260-43139273 chr19:43139258-43139274 chr19:43139257-43139275

No.	Distal block	Cell Line	Cell type
1	chr19:43139185..43139985-chr19:43166999..43167914,2	MCF-7	breast:
2	chr19:43138891..43139734-chr19:43166436..43166942,2	MCF-7	breast:
3	chr19:43139154..43139986-chr19:43246322..43246897,2	MCF-7	breast:

Variant related genes	Relation type
CEACAMP1	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	esv2422468	chr19:42991289-43669027	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1057390	chr19:43003323-43173028	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv482597	chr19:43037214-43222644	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2758501	chr19:43042747-43899053	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	esv2758763	chr19:43042747-43899053	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv428023	chr19:43042747-43899053	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	esv2422227	chr19:43059426-43669485	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv1064734	chr19:43076046-43182478	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1058936	chr19:43082848-43228161	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv3368556	chr19:43121424-43180449	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv978897	chr19:43137733-43151377	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1063042	chr19:43139043-43175294	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1056270	chr19:43139043-43542819	Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:43139000-43139600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links