Variant report

Variant	rs11731852
Chromosome Location	chr4:26782645-26782646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26779353..26784175-chr4:26785525..26789077,5	MCF-7	breast:
2	chr4:26734519..26736508-chr4:26782080..26784600,2	MCF-7	breast:
3	chr4:26782441..26785167-chr4:26790484..26792733,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TBC1D19-2	chr4:26780029-26786640	NONHSAT095883

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11734761	0.81[AMR][1000 genomes]
rs4602486	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1005550	chr4:26778410-26824285	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:26748200-26789000	Weak transcription	Gastric	stomach
3	chr4:26749800-26789200	Weak transcription	Fetal Kidney	kidney
4	chr4:26755600-26788600	Weak transcription	NHLF	lung
5	chr4:26757600-26789000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:26761400-26788800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:26768000-26789200	Weak transcription	HSMMtube	muscle
8	chr4:26771400-26789400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr4:26774200-26789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:26774400-26783800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:26774400-26787600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:26774400-26789200	Weak transcription	Pancreas	Pancrea
13	chr4:26776000-26783600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:26776000-26783800	Weak transcription	Ovary	ovary
15	chr4:26776000-26789000	Weak transcription	Fetal Thymus	thymus
16	chr4:26776000-26789000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:26776000-26789400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:26776000-26789600	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:26776000-26790000	Weak transcription	Brain Germinal Matrix	brain
20	chr4:26776200-26783800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:26776200-26785200	Weak transcription	Dnd41	blood
22	chr4:26776200-26789200	Weak transcription	Fetal Lung	lung
23	chr4:26776200-26789400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:26776200-26789400	Weak transcription	Fetal Intestine Large	intestine
25	chr4:26776200-26789400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr4:26777000-26789200	Weak transcription	Psoas Muscle	Psoas
27	chr4:26777200-26784000	Weak transcription	Aorta	Aorta
28	chr4:26779600-26783200	Enhancers	Fetal Brain Male	brain
29	chr4:26779600-26789400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:26780000-26784800	Enhancers	HMEC	breast
31	chr4:26780200-26783200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:26780200-26785200	Enhancers	Fetal Heart	heart
33	chr4:26780600-26782800	Strong transcription	Fetal Muscle Leg	muscle
34	chr4:26780800-26783400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr4:26780800-26784200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:26780800-26785000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:26781000-26783200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:26781000-26784400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:26781000-26784400	Enhancers	Osteobl	bone
40	chr4:26781000-26785000	Enhancers	NHDF-Ad	bronchial
41	chr4:26781200-26783800	Weak transcription	Right Ventricle	heart
42	chr4:26781200-26784200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:26781400-26789600	Weak transcription	Fetal Brain Female	brain
44	chr4:26781600-26783800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr4:26781600-26789200	Weak transcription	Lung	lung
46	chr4:26781800-26783000	Weak transcription	Primary T cells from cord blood	blood
47	chr4:26782000-26782800	Enhancers	Primary B cells from peripheral blood	blood
48	chr4:26782000-26783200	Enhancers	HUVEC	blood vessel
49	chr4:26782000-26783600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:26782000-26783600	Enhancers	K562	blood

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