Variant report

Variant	rs4602486
Chromosome Location	chr4:26773103-26773104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10939132	0.81[EUR][1000 genomes]
rs10939134	0.82[EUR][1000 genomes]
rs10939135	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1129230	0.85[EUR][1000 genomes]
rs1135204	0.85[EUR][1000 genomes]
rs11721891	0.82[EUR][1000 genomes]
rs11724595	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11726910	0.91[ASN][1000 genomes]
rs11731852	0.81[AMR][1000 genomes]
rs11734761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931159	0.83[EUR][1000 genomes]
rs11937465	0.83[EUR][1000 genomes]
rs11944010	0.81[EUR][1000 genomes]
rs12498454	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12504472	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12505393	0.91[ASN][1000 genomes]
rs12507314	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12644574	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12647180	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13111381	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13112222	0.98[EUR][1000 genomes]
rs13123511	0.85[EUR][1000 genomes]
rs13125612	0.81[EUR][1000 genomes]
rs13131355	0.82[EUR][1000 genomes]
rs13146364	0.81[EUR][1000 genomes]
rs13151477	0.85[EUR][1000 genomes]
rs34010107	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34241157	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34837351	0.85[EUR][1000 genomes]
rs35124296	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35588742	0.95[EUR][1000 genomes]
rs35654367	0.83[EUR][1000 genomes]
rs4234981	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4321621	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4355378	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4365714	0.81[EUR][1000 genomes]
rs4437235	0.82[EUR][1000 genomes]
rs4467548	0.81[EUR][1000 genomes]
rs4527463	0.82[EUR][1000 genomes]
rs4588446	0.84[EUR][1000 genomes]
rs4590010	0.82[EUR][1000 genomes]
rs4692551	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5024581	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55767426	0.97[EUR][1000 genomes]
rs56150091	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58565506	0.82[EUR][1000 genomes]
rs60503601	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60915838	0.81[EUR][1000 genomes]
rs61690082	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62299027	0.84[EUR][1000 genomes]
rs62300967	0.85[EUR][1000 genomes]
rs62300968	0.85[EUR][1000 genomes]
rs62412678	0.81[EUR][1000 genomes]
rs6858652	0.83[EUR][1000 genomes]
rs7655144	0.81[EUR][1000 genomes]
rs7657453	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7658999	0.84[EUR][1000 genomes]
rs7672267	0.83[EUR][1000 genomes]
rs7689475	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9790514	0.82[EUR][1000 genomes]
rs9790776	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:26727400-26773800	Weak transcription	Left Ventricle	heart
5	chr4:26727400-26775400	Weak transcription	Right Ventricle	heart
6	chr4:26732600-26773800	Weak transcription	Aorta	Aorta
7	chr4:26744400-26775400	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:26745200-26775400	Weak transcription	Brain Anterior Caudate	brain
9	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:26747600-26773800	Weak transcription	Pancreas	Pancrea
11	chr4:26747600-26775400	Weak transcription	Small Intestine	intestine
12	chr4:26748000-26780200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:26748200-26773600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:26748200-26789000	Weak transcription	Gastric	stomach
15	chr4:26748600-26773800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:26748800-26775400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:26749400-26781000	Weak transcription	NHDF-Ad	bronchial
18	chr4:26749800-26789200	Weak transcription	Fetal Kidney	kidney
19	chr4:26750600-26774200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:26750600-26780000	Weak transcription	HMEC	breast
21	chr4:26750600-26781000	Weak transcription	Lung	lung
22	chr4:26750800-26775400	Weak transcription	Fetal Intestine Large	intestine
23	chr4:26751200-26775800	Weak transcription	Primary B cells from cord blood	blood
24	chr4:26751400-26775400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:26752200-26780200	Weak transcription	NHEK	skin
26	chr4:26752800-26780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:26753400-26774600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:26753400-26775800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr4:26754400-26775400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:26754400-26781800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr4:26754600-26775400	Weak transcription	Fetal Stomach	stomach
32	chr4:26755600-26773800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:26755600-26773800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:26755600-26774000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr4:26755600-26774000	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:26755600-26775400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:26755600-26775400	Weak transcription	Ovary	ovary
38	chr4:26755600-26775400	Weak transcription	Psoas Muscle	Psoas
39	chr4:26755600-26788600	Weak transcription	NHLF	lung
40	chr4:26757600-26789000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr4:26758400-26775400	Weak transcription	Brain Hippocampus Middle	brain
42	chr4:26759000-26775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:26761400-26773800	Weak transcription	Fetal Muscle Trunk	muscle
44	chr4:26761400-26775400	Weak transcription	Thymus	Thymus
45	chr4:26761400-26788800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr4:26763200-26775400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr4:26765000-26775400	Weak transcription	Fetal Intestine Small	intestine
48	chr4:26766200-26775400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr4:26766800-26774600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:26767800-26778200	Strong transcription	Muscle Satellite Cultured Cells	--

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