Variant report

Variant	rs55767426
Chromosome Location	chr4:26774938-26774939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10939132	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10939134	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10939135	0.83[EUR][1000 genomes]
rs1129230	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1135204	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11721891	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11724595	0.85[EUR][1000 genomes]
rs11734761	0.97[EUR][1000 genomes]
rs11931159	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11937465	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11944010	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12498454	0.82[EUR][1000 genomes]
rs12504472	0.82[EUR][1000 genomes]
rs12507314	0.85[EUR][1000 genomes]
rs12644574	0.82[EUR][1000 genomes]
rs12647180	0.80[EUR][1000 genomes]
rs13111381	0.80[EUR][1000 genomes]
rs13112222	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123511	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13125612	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13131355	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13146364	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13151477	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1861470	0.81[ASN][1000 genomes]
rs260934	0.81[ASN][1000 genomes]
rs260935	0.81[ASN][1000 genomes]
rs34010107	0.82[EUR][1000 genomes]
rs34241157	0.83[EUR][1000 genomes]
rs34837351	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35124296	0.97[EUR][1000 genomes]
rs35588742	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35654367	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4234981	0.85[EUR][1000 genomes]
rs4321621	0.82[EUR][1000 genomes]
rs4355378	0.80[EUR][1000 genomes]
rs4365714	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4437235	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4467548	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4527463	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4588446	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4590010	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4602486	0.97[EUR][1000 genomes]
rs4692551	0.81[EUR][1000 genomes]
rs5024581	0.98[EUR][1000 genomes]
rs56150091	0.85[EUR][1000 genomes]
rs58565506	0.83[EUR][1000 genomes]
rs60503601	0.82[EUR][1000 genomes]
rs60915838	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61690082	0.80[EUR][1000 genomes]
rs62299027	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62300967	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62300968	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62412678	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6858652	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7655144	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7657453	0.80[EUR][1000 genomes]
rs7658999	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7672267	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7689475	0.95[EUR][1000 genomes]
rs9790514	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9790776	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:26727400-26775400	Weak transcription	Right Ventricle	heart
5	chr4:26744400-26775400	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:26745200-26775400	Weak transcription	Brain Anterior Caudate	brain
7	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:26747600-26775400	Weak transcription	Small Intestine	intestine
9	chr4:26748000-26780200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:26748200-26789000	Weak transcription	Gastric	stomach
11	chr4:26748800-26775400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:26749400-26781000	Weak transcription	NHDF-Ad	bronchial
13	chr4:26749800-26789200	Weak transcription	Fetal Kidney	kidney
14	chr4:26750600-26780000	Weak transcription	HMEC	breast
15	chr4:26750600-26781000	Weak transcription	Lung	lung
16	chr4:26750800-26775400	Weak transcription	Fetal Intestine Large	intestine
17	chr4:26751200-26775800	Weak transcription	Primary B cells from cord blood	blood
18	chr4:26751400-26775400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:26752200-26780200	Weak transcription	NHEK	skin
20	chr4:26752800-26780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:26753400-26775800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr4:26754400-26775400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:26754400-26781800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr4:26754600-26775400	Weak transcription	Fetal Stomach	stomach
25	chr4:26755600-26775400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:26755600-26775400	Weak transcription	Ovary	ovary
27	chr4:26755600-26775400	Weak transcription	Psoas Muscle	Psoas
28	chr4:26755600-26788600	Weak transcription	NHLF	lung
29	chr4:26757600-26789000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr4:26758400-26775400	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:26759000-26775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:26761400-26775400	Weak transcription	Thymus	Thymus
33	chr4:26761400-26788800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:26763200-26775400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:26765000-26775400	Weak transcription	Fetal Intestine Small	intestine
36	chr4:26766200-26775400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr4:26767800-26778200	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr4:26768000-26789200	Weak transcription	HSMMtube	muscle
39	chr4:26770800-26776400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:26771200-26778600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:26771400-26775200	Weak transcription	Brain Substantia Nigra	brain
42	chr4:26771400-26778600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr4:26771400-26789400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr4:26771600-26775000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:26771800-26775400	Weak transcription	Liver	Liver
46	chr4:26772200-26775600	Weak transcription	NH-A	brain
47	chr4:26772800-26775200	Strong transcription	Adipose Nuclei	Adipose
48	chr4:26773400-26775600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:26773800-26775000	Strong transcription	Fetal Lung	lung
50	chr4:26773800-26775600	Weak transcription	HSMM	muscle

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