Variant report

Variant	rs6858652
Chromosome Location	chr4:26733474-26733475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10000211	0.80[EUR][1000 genomes]
rs10939128	0.82[EUR][1000 genomes]
rs10939132	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10939134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10939135	0.98[EUR][1000 genomes]
rs1129230	0.92[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1135204	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11721891	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11724595	0.96[EUR][1000 genomes]
rs11726910	0.88[EUR][1000 genomes]
rs11733702	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs11734761	0.84[EUR][1000 genomes]
rs11931159	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11937465	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11942145	0.92[CEU][hapmap]
rs11944010	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12498454	0.97[EUR][1000 genomes]
rs12501439	0.86[EUR][1000 genomes]
rs12504472	0.97[EUR][1000 genomes]
rs12505249	0.92[CEU][hapmap];0.98[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs12505393	0.89[EUR][1000 genomes]
rs12507314	0.92[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs12510371	0.91[CEU][hapmap]
rs12510995	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs12640312	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs12644574	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs12647180	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs12650361	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs13111381	0.95[EUR][1000 genomes]
rs13111922	0.81[EUR][1000 genomes]
rs13112222	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13121378	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs13123511	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13125612	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13131355	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13136955	0.84[EUR][1000 genomes]
rs13138699	0.92[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]
rs13138712	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs13146364	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13146615	0.96[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs13151477	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1565303	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1565304	0.82[EUR][1000 genomes]
rs1619573	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs1641562	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1861470	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2309413	0.92[CEU][hapmap]
rs260934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs260935	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs260937	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs260939	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs260948	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs260950	1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.87[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs260956	0.82[EUR][1000 genomes]
rs260958	0.83[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs260959	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs260960	0.84[EUR][1000 genomes]
rs2908823	0.81[EUR][1000 genomes]
rs34010107	0.97[EUR][1000 genomes]
rs34241157	0.98[EUR][1000 genomes]
rs34832881	0.80[EUR][1000 genomes]
rs34837351	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35124296	0.83[EUR][1000 genomes]
rs35232657	0.82[EUR][1000 genomes]
rs35588742	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35654367	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4234981	0.96[EUR][1000 genomes]
rs4321621	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs4355378	0.95[EUR][1000 genomes]
rs4365714	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4437235	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4467548	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4527463	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4588446	1.00[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4590010	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4602486	0.83[EUR][1000 genomes]
rs4692549	0.91[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs4692551	0.96[EUR][1000 genomes]
rs5024581	0.82[EUR][1000 genomes]
rs55767426	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56150091	0.96[EUR][1000 genomes]
rs58565506	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60503601	0.97[EUR][1000 genomes]
rs60915838	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61690082	0.95[EUR][1000 genomes]
rs62299027	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62300967	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62300968	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62412678	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6448458	0.92[CEU][hapmap]
rs67655603	0.82[EUR][1000 genomes]
rs6821370	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs7655144	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7657453	0.95[EUR][1000 genomes]
rs7658999	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7672267	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7683324	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7687087	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7689475	0.82[EUR][1000 genomes]
rs9790514	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9790776	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:26705400-26753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:26709000-26750000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:26711200-26745200	Weak transcription	Fetal Intestine Large	intestine
5	chr4:26711200-26750000	Weak transcription	Adipose Nuclei	Adipose
6	chr4:26711400-26771800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:26711600-26746200	Weak transcription	Dnd41	blood
8	chr4:26716200-26750200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:26716800-26748400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:26718000-26754400	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:26719200-26735400	Weak transcription	Fetal Brain Male	brain
12	chr4:26719200-26736200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:26719200-26743200	Weak transcription	NHLF	lung
14	chr4:26719200-26744400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:26719600-26749800	Weak transcription	HMEC	breast
17	chr4:26720400-26750000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:26722200-26743600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:26722400-26734800	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:26722600-26748800	Weak transcription	Primary B cells from cord blood	blood
21	chr4:26722600-26758800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:26723000-26744800	Weak transcription	Brain Anterior Caudate	brain
23	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:26723600-26764200	Weak transcription	Fetal Intestine Small	intestine
25	chr4:26724000-26772000	Weak transcription	Brain Angular Gyrus	brain
26	chr4:26725800-26734800	Weak transcription	Spleen	Spleen
27	chr4:26726400-26744600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:26726600-26738400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:26726800-26734800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr4:26726800-26736400	Weak transcription	Primary T cells from cord blood	blood
31	chr4:26726800-26750200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr4:26726800-26751000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr4:26727200-26756600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr4:26727400-26773800	Weak transcription	Left Ventricle	heart
35	chr4:26727400-26775400	Weak transcription	Right Ventricle	heart
36	chr4:26728000-26734000	Weak transcription	Ovary	ovary
37	chr4:26728000-26742400	Weak transcription	Fetal Lung	lung
38	chr4:26729200-26735400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr4:26729200-26743000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:26729200-26750200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr4:26729400-26734400	Weak transcription	Fetal Heart	heart
42	chr4:26730800-26734000	Strong transcription	Osteobl	bone
43	chr4:26731000-26735200	Weak transcription	Lung	lung
44	chr4:26731400-26733600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr4:26731600-26743800	Weak transcription	HSMM	muscle
46	chr4:26732000-26735000	Strong transcription	Fetal Thymus	thymus
47	chr4:26732200-26734200	Strong transcription	Thymus	Thymus
48	chr4:26732200-26734400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr4:26732400-26734000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:26732400-26734200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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