Variant report

Variant	rs4527463
Chromosome Location	chr4:26706342-26706343
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10000211	0.81[EUR][1000 genomes]
rs10939128	0.83[EUR][1000 genomes]
rs10939132	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10939134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10939135	0.97[EUR][1000 genomes]
rs1129230	0.92[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1135204	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11721891	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724595	0.95[EUR][1000 genomes]
rs11726910	0.89[EUR][1000 genomes]
rs11733702	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs11734761	0.83[EUR][1000 genomes]
rs11931159	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11937465	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11942145	0.91[CEU][hapmap]
rs11944010	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12498454	0.98[EUR][1000 genomes]
rs12501439	0.87[EUR][1000 genomes]
rs12504472	0.98[EUR][1000 genomes]
rs12505249	0.92[CEU][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12505393	0.90[EUR][1000 genomes]
rs12507314	0.95[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs12510371	0.91[CEU][hapmap]
rs12510995	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs12640312	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs12644574	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs12647180	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs12650361	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs13111381	0.96[EUR][1000 genomes]
rs13111922	0.82[EUR][1000 genomes]
rs13112222	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13121299	0.80[EUR][1000 genomes]
rs13121378	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs13123511	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13125612	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13131355	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13136955	0.85[EUR][1000 genomes]
rs13138699	0.92[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs13138712	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs13146364	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13146615	0.96[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs13151477	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1565303	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1565304	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1619573	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1641562	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1861470	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2111006	0.80[EUR][1000 genomes]
rs2309413	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs260934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs260935	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs260937	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs260939	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs260948	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs260950	1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs260952	0.81[EUR][1000 genomes]
rs260956	0.83[EUR][1000 genomes]
rs260958	0.83[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs260959	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs260960	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2908823	0.82[EUR][1000 genomes]
rs34010107	0.98[EUR][1000 genomes]
rs34241157	0.97[EUR][1000 genomes]
rs34832881	0.81[EUR][1000 genomes]
rs34837351	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35124296	0.82[EUR][1000 genomes]
rs35232657	0.83[EUR][1000 genomes]
rs35588742	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35654367	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4234981	0.95[EUR][1000 genomes]
rs4321621	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs4355378	0.96[EUR][1000 genomes]
rs4365714	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4437235	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4467548	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4588446	1.00[ASW][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4590010	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4602486	0.82[EUR][1000 genomes]
rs4692549	0.91[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs4692551	0.97[EUR][1000 genomes]
rs5024581	0.81[EUR][1000 genomes]
rs55767426	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56150091	0.95[EUR][1000 genomes]
rs58565506	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60503601	0.98[EUR][1000 genomes]
rs60915838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61690082	0.96[EUR][1000 genomes]
rs62299027	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62300967	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62300968	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62412678	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448458	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs67655603	0.83[EUR][1000 genomes]
rs6821370	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs6858652	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7655144	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7657453	0.96[EUR][1000 genomes]
rs7658999	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7672267	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7683324	0.96[CEU][hapmap];0.91[CHB][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7687087	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7689475	0.81[EUR][1000 genomes]
rs9790514	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9790776	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
2	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
6	chr4:26687000-26727000	Weak transcription	Left Ventricle	heart
7	chr4:26692200-26712200	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:26692400-26726400	Weak transcription	Ovary	ovary
9	chr4:26693000-26711000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:26693000-26716000	Weak transcription	HSMM	muscle
11	chr4:26694200-26709600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:26694400-26718600	Weak transcription	Osteobl	bone
13	chr4:26694600-26711600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:26696200-26718800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:26696200-26726400	Weak transcription	Thymus	Thymus
16	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
17	chr4:26696400-26710600	Weak transcription	Fetal Thymus	thymus
18	chr4:26696400-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:26696400-26726600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:26703400-26711000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:26703800-26715200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:26703800-26718600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:26703800-26718600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:26703800-26718800	Weak transcription	NH-A	brain
25	chr4:26704200-26711000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:26704600-26718600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:26705400-26753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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